Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.04□□□□□ -0.16
HMGB3O15347 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
HMGB3O15347 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
HMGB3O15347 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 AC008040.2-201ENST00000461049 708 ntBASIC14.04□□□□□ -0.16
HMGB3O15347 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
HMGB3O15347 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC14.04□□□□□ -0.16
HMGB3O15347 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC14.04□□□□□ -0.16
HMGB3O15347 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC14.04□□□□□ -0.16
HMGB3O15347 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
HMGB3O15347 AL138781.1-201ENST00000566567 1274 ntBASIC14.04□□□□□ -0.16
HMGB3O15347 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC14.04□□□□□ -0.16
HMGB3O15347 MTDHP1-201ENST00000605323 784 ntBASIC14.04□□□□□ -0.16
HMGB3O15347 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC14.04□□□□□ -0.16
HMGB3O15347 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 FBN3-201ENST00000270509 9232 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 AL596257.1-201ENST00000641463 2694 ntBASIC14.04□□□□□ -0.16
HMGB3O15347 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC14.04□□□□□ -0.16
HMGB3O15347 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 KRT16P5-201ENST00000455284 522 ntBASIC14.03□□□□□ -0.16
HMGB3O15347 RPS2P4-201ENST00000476944 856 ntBASIC14.03□□□□□ -0.16
HMGB3O15347 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC14.03□□□□□ -0.16
HMGB3O15347 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC14.03□□□□□ -0.16
HMGB3O15347 ABBA01031674.1-201ENST00000635145 728 ntBASIC14.03□□□□□ -0.16
HMGB3O15347 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
HMGB3O15347 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HMGB3O15347 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HMGB3O15347 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
HMGB3O15347 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.03□□□□□ -0.16
HMGB3O15347 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.03□□□□□ -0.16
HMGB3O15347 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HMGB3O15347 PCDHA3-202ENST00000532566 4594 ntBASIC14.03□□□□□ -0.16
HMGB3O15347 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
HMGB3O15347 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
HMGB3O15347 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.02□□□□□ -0.16
HMGB3O15347 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.16
HMGB3O15347 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 AL391005.1-201ENST00000623953 2435 ntBASIC14.02□□□□□ -0.16
HMGB3O15347 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC14.02□□□□□ -0.16
HMGB3O15347 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
HMGB3O15347 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.02□□□□□ -0.16
HMGB3O15347 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
HMGB3O15347 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC14.02□□□□□ -0.16
HMGB3O15347 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HMGB3O15347 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC14.02□□□□□ -0.17
HMGB3O15347 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HMGB3O15347 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HMGB3O15347 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HMGB3O15347 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
HMGB3O15347 NIFKP9-201ENST00000419265 221 ntBASIC14.02□□□□□ -0.17
HMGB3O15347 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC14.02□□□□□ -0.17
HMGB3O15347 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms