Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 MED15P5-201ENST00000423150 992 ntBASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC092910.1-201ENST00000482027 1129 ntBASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 MTDHP4-201ENST00000600287 670 ntBASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 LAGE3P1-201ENST00000425356 484 ntBASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC098831.1-202ENST00000438821 336 ntBASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 NKAPP1-205ENST00000585790 367 ntBASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 PGM5P2-202ENST00000637225 1043 ntBASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 AP000867.4-201ENST00000641616 219 ntBASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC107918.4-202ENST00000641623 219 ntBASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 GMCL1P1-201ENST00000463439 1581 ntBASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TMX2-CTNND1H3BSU7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 DNAJB3-201ENST00000446806 729 ntBASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC025062.2-201ENST00000605477 670 ntBASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TMX2-CTNND1H3BSU7 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.08■□□□□ 0.33
TMX2-CTNND1H3BSU7 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TMX2-CTNND1H3BSU7 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TMX2-CTNND1H3BSU7 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.08■□□□□ 0.32
TMX2-CTNND1H3BSU7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TMX2-CTNND1H3BSU7 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TMX2-CTNND1H3BSU7 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms