Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 AC093503.3-201ENST00000624917 2352 ntBASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 AL590787.1-201ENST00000568856 1315 ntBASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 AC006116.8-202ENST00000587620 1550 ntBASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA1Q9Y5H4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 PMS2P4-201ENST00000412466 1052 ntBASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 AL627223.1-201ENST00000416693 442 ntBASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 AL513480.1-201ENST00000451731 511 ntBASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 AC026120.1-201ENST00000611536 926 ntBASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDHGA1Q9Y5H4 BCL2-203ENST00000589955 5011 ntBASIC16.64■□□□□ 0.26
PCDHGA1Q9Y5H4 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
PCDHGA1Q9Y5H4 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms