Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX2IPQ9Y2D8 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SSX2IPQ9Y2D8 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.73■□□□□ 0.59
SSX2IPQ9Y2D8 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.73■□□□□ 0.59
SSX2IPQ9Y2D8 AC004817.3-201ENST00000602957 2129 ntBASIC18.73■□□□□ 0.59
SSX2IPQ9Y2D8 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX2IPQ9Y2D8 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SSX2IPQ9Y2D8 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX2IPQ9Y2D8 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 AL049757.1-201ENST00000616842 1596 ntBASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 KLF4P1-201ENST00000412782 1185 ntBASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 NOC2LP2-201ENST00000407594 1944 ntBASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX2IPQ9Y2D8 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 CRYGEP-201ENST00000412192 528 ntBASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SSX2IPQ9Y2D8 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
SSX2IPQ9Y2D8 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 SIRPAP1-201ENST00000448467 1770 ntBASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 BX276092.7-203ENST00000637198 1536 ntBASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 BICD1-207ENST00000551848 1962 ntBASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX2IPQ9Y2D8 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms