Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 AL353593.2-201ENST00000602529 1483 ntBASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.02■□□□□ 0.63
LIMA1Q9UHB6 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 AL603756.1-201ENST00000606511 2163 ntBASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 FAM220CP-201ENST00000395253 831 ntBASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 AL645929.1-201ENST00000420084 975 ntBASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 TSPY22P-201ENST00000427496 604 ntBASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
LIMA1Q9UHB6 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMA1Q9UHB6 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19■□□□□ 0.63
LIMA1Q9UHB6 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 AL135999.2-201ENST00000622438 1686 ntBASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms