Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 AC023141.13-201ENST00000604991 943 ntBASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 AC105339.1-204ENST00000636249 355 ntBASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 AC092902.6-201ENST00000641783 218 ntBASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 AC003669.1-201ENST00000334569 611 ntBASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 GGTLC5P-201ENST00000617623 998 ntBASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LIMD1Q9UGP4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 AC109322.1-201ENST00000524499 1264 ntBASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 MIR4745-201ENST00000577608 62 ntBASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 AC005498.2-205ENST00000593218 784 ntBASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMD1Q9UGP4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 AC097637.2-201ENST00000624096 1997 ntBASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms