Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 IGHV3-65-201ENST00000523210 341 ntBASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 AC008667.4-201ENST00000607370 168 ntBASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLCF1Q9UBD9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 OR6D1P-202ENST00000641007 5290 ntBASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 AL390961.4-201ENST00000623958 2535 ntBASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 KRT18P3-201ENST00000451602 1288 ntBASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 AC108073.2-201ENST00000464002 357 ntBASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.46■□□□□ 0.07
CLCF1Q9UBD9 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CLCF1Q9UBD9 AC012317.2-201ENST00000623305 2251 ntBASIC15.46■□□□□ 0.06
CLCF1Q9UBD9 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLCF1Q9UBD9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 AL135999.2-201ENST00000622438 1686 ntBASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 AC007967.2-201ENST00000432613 625 ntBASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms