Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 PGAM5P1-201ENST00000518923 814 ntBASIC18.68■□□□□ 0.58
CNTN3Q9P232 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 TERC-201ENST00000602385 541 ntBASIC18.68■□□□□ 0.58
CNTN3Q9P232 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 AC023511.2-201ENST00000618803 211 ntBASIC18.68■□□□□ 0.58
CNTN3Q9P232 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 PMS2P7-201ENST00000506558 1336 ntBASIC18.68■□□□□ 0.58
CNTN3Q9P232 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.67■□□□□ 0.58
CNTN3Q9P232 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CNTN3Q9P232 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.67■□□□□ 0.58
CNTN3Q9P232 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.67■□□□□ 0.58
CNTN3Q9P232 MIR940-201ENST00000401276 94 ntBASIC18.67■□□□□ 0.58
CNTN3Q9P232 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.67■□□□□ 0.58
CNTN3Q9P232 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
CNTN3Q9P232 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.67■□□□□ 0.58
CNTN3Q9P232 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CNTN3Q9P232 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CNTN3Q9P232 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 PRSS29P-201ENST00000440800 595 ntBASIC18.66■□□□□ 0.58
CNTN3Q9P232 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 KRT18P3-201ENST00000451602 1288 ntBASIC18.66■□□□□ 0.58
CNTN3Q9P232 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.66■□□□□ 0.58
CNTN3Q9P232 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CNTN3Q9P232 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CNTN3Q9P232 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 AC007967.2-201ENST00000432613 625 ntBASIC18.65■□□□□ 0.58
CNTN3Q9P232 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms