Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 AC010460.3-201ENST00000511359 1579 ntBASIC17.28■□□□□ 0.36
SSU72Q9NP77 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 AP002490.2-201ENST00000524791 560 ntBASIC17.27■□□□□ 0.36
SSU72Q9NP77 GCSHP2-201ENST00000560971 527 ntBASIC17.27■□□□□ 0.36
SSU72Q9NP77 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.27■□□□□ 0.36
SSU72Q9NP77 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSU72Q9NP77 AC007950.2-201ENST00000615045 2347 ntBASIC17.27■□□□□ 0.35
SSU72Q9NP77 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SSU72Q9NP77 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SSU72Q9NP77 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SSU72Q9NP77 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SSU72Q9NP77 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SSU72Q9NP77 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SSU72Q9NP77 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SSU72Q9NP77 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.35
SSU72Q9NP77 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SSU72Q9NP77 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SSU72Q9NP77 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.27■□□□□ 0.35
SSU72Q9NP77 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.27■□□□□ 0.35
SSU72Q9NP77 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 HLA-F-220ENST00000434407 884 ntBASIC17.26■□□□□ 0.35
SSU72Q9NP77 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 AL158047.1-201ENST00000445918 881 ntBASIC17.26■□□□□ 0.35
SSU72Q9NP77 RASA4DP-201ENST00000460726 1199 ntBASIC17.26■□□□□ 0.35
SSU72Q9NP77 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 AC010947.1-201ENST00000623454 693 ntBASIC17.26■□□□□ 0.35
SSU72Q9NP77 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SSU72Q9NP77 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSU72Q9NP77 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.25■□□□□ 0.35
SSU72Q9NP77 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 CYP2D8P-201ENST00000433633 1490 ntBASIC17.25■□□□□ 0.35
SSU72Q9NP77 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SSU72Q9NP77 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
SSU72Q9NP77 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSU72Q9NP77 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.25■□□□□ 0.35
SSU72Q9NP77 IGHGP-201ENST00000390555 1178 ntBASIC17.25■□□□□ 0.35
SSU72Q9NP77 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.25■□□□□ 0.35
SSU72Q9NP77 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.25■□□□□ 0.35
SSU72Q9NP77 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.25■□□□□ 0.35
SSU72Q9NP77 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SSU72Q9NP77 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms