Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCGF1Q9BSM1 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCGF1Q9BSM1 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC14.66□□□□□ -0.06
PCGF1Q9BSM1 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCGF1Q9BSM1 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 GNAS-203ENST00000306120 1878 ntBASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 AC134043.2-201ENST00000624206 2238 ntBASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 MEG3-211ENST00000452514 461 ntTSL 3 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 BMF-207ENST00000559701 630 ntTSL 3 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 IGHV3OR16-7-201ENST00000604106 360 ntBASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 AL031008.1-201ENST00000619963 541 ntBASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 AC125634.1-201ENST00000438758 1403 ntBASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.65□□□□□ -0.06
PCGF1Q9BSM1 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 DANCR-204ENST00000444958 709 ntTSL 3 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 AC079781.3-201ENST00000449110 356 ntBASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 SAPCD2P3-201ENST00000455031 850 ntBASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 AL138831.2-201ENST00000606564 490 ntBASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 TBC1D3P5-201ENST00000579401 1545 ntBASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PCGF1Q9BSM1 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.63□□□□□ -0.07
PCGF1Q9BSM1 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.63□□□□□ -0.07
PCGF1Q9BSM1 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PCGF1Q9BSM1 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCGF1Q9BSM1 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCGF1Q9BSM1 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms