Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
IFT140Q96RY7 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
IFT140Q96RY7 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC28.42■■■□□ 2.14
IFT140Q96RY7 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC28.42■■■□□ 2.14
IFT140Q96RY7 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
IFT140Q96RY7 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
IFT140Q96RY7 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
IFT140Q96RY7 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC28.41■■■□□ 2.14
IFT140Q96RY7 AL138918.1-201ENST00000568306 659 ntBASIC28.41■■■□□ 2.14
IFT140Q96RY7 AC073389.1-201ENST00000595595 795 ntBASIC28.41■■■□□ 2.14
IFT140Q96RY7 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC28.41■■■□□ 2.14
IFT140Q96RY7 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
IFT140Q96RY7 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
IFT140Q96RY7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC28.41■■■□□ 2.14
IFT140Q96RY7 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC28.41■■■□□ 2.14
IFT140Q96RY7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC28.41■■■□□ 2.14
IFT140Q96RY7 AP3S2-216ENST00000617003 1561 ntBASIC28.41■■■□□ 2.14
IFT140Q96RY7 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC28.41■■■□□ 2.14
IFT140Q96RY7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
IFT140Q96RY7 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC28.41■■■□□ 2.14
IFT140Q96RY7 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC28.41■■■□□ 2.14
IFT140Q96RY7 AL391825.1-201ENST00000457671 1364 ntBASIC28.41■■■□□ 2.14
IFT140Q96RY7 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 APOC4-201ENST00000591600 348 ntTSL 3 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 POR-209ENST00000439269 1858 ntTSL 2 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
IFT140Q96RY7 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC28.4■■■□□ 2.14
IFT140Q96RY7 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
IFT140Q96RY7 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
IFT140Q96RY7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC28.39■■■□□ 2.14
IFT140Q96RY7 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC28.39■■■□□ 2.14
IFT140Q96RY7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC28.39■■■□□ 2.14
IFT140Q96RY7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
IFT140Q96RY7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC28.39■■■□□ 2.14
IFT140Q96RY7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC28.39■■■□□ 2.14
IFT140Q96RY7 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC28.39■■■□□ 2.14
IFT140Q96RY7 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
IFT140Q96RY7 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
IFT140Q96RY7 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC28.39■■■□□ 2.13
IFT140Q96RY7 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.13
IFT140Q96RY7 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC28.39■■■□□ 2.13
IFT140Q96RY7 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC28.39■■■□□ 2.13
IFT140Q96RY7 RAB43P1-201ENST00000561790 589 ntBASIC28.39■■■□□ 2.13
IFT140Q96RY7 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC28.39■■■□□ 2.13
IFT140Q96RY7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC28.38■■■□□ 2.13
IFT140Q96RY7 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC28.38■■■□□ 2.13
IFT140Q96RY7 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC28.38■■■□□ 2.13
IFT140Q96RY7 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC28.38■■■□□ 2.13
IFT140Q96RY7 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC28.38■■■□□ 2.13
IFT140Q96RY7 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC28.38■■■□□ 2.13
IFT140Q96RY7 AC003101.2-201ENST00000612557 442 ntBASIC28.38■■■□□ 2.13
IFT140Q96RY7 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
IFT140Q96RY7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC28.38■■■□□ 2.13
IFT140Q96RY7 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC28.38■■■□□ 2.13
IFT140Q96RY7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
IFT140Q96RY7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC28.37■■■□□ 2.13
IFT140Q96RY7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
IFT140Q96RY7 FOXO1B-201ENST00000504678 1527 ntBASIC28.37■■■□□ 2.13
IFT140Q96RY7 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
IFT140Q96RY7 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
IFT140Q96RY7 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC28.37■■■□□ 2.13
IFT140Q96RY7 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC28.37■■■□□ 2.13
IFT140Q96RY7 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC28.37■■■□□ 2.13
IFT140Q96RY7 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
IFT140Q96RY7 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC28.37■■■□□ 2.13
IFT140Q96RY7 RN7SL752P-201ENST00000463779 287 ntBASIC28.37■■■□□ 2.13
IFT140Q96RY7 SPTSSB-204ENST00000617024 1292 ntBASIC28.37■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms