Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 AC112492.5-201ENST00000421897 457 ntBASIC17.02■□□□□ 0.32
VPS13AQ96RL7 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
VPS13AQ96RL7 AL512638.1-201ENST00000457493 794 ntBASIC17.02■□□□□ 0.31
VPS13AQ96RL7 IGHV3-42-201ENST00000520410 361 ntBASIC17.02■□□□□ 0.31
VPS13AQ96RL7 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.02■□□□□ 0.31
VPS13AQ96RL7 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS13AQ96RL7 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS13AQ96RL7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VPS13AQ96RL7 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS13AQ96RL7 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 MYCLP1-201ENST00000372451 1075 ntBASIC17.01■□□□□ 0.31
VPS13AQ96RL7 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 AC129492.6-201ENST00000611383 1305 ntBASIC17.01■□□□□ 0.31
VPS13AQ96RL7 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 AC241585.1-201ENST00000433527 519 ntBASIC17.01■□□□□ 0.31
VPS13AQ96RL7 AC107918.2-201ENST00000530817 355 ntBASIC17.01■□□□□ 0.31
VPS13AQ96RL7 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 REXO1L6P-201ENST00000603433 1515 ntBASIC17.01■□□□□ 0.31
VPS13AQ96RL7 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 RAB43P1-201ENST00000561790 589 ntBASIC17.01■□□□□ 0.31
VPS13AQ96RL7 REXO1L11P-201ENST00000620964 1927 ntBASIC17.01■□□□□ 0.31
VPS13AQ96RL7 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS13AQ96RL7 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17■□□□□ 0.31
VPS13AQ96RL7 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17■□□□□ 0.31
VPS13AQ96RL7 AC093677.2-201ENST00000600169 1863 ntBASIC17■□□□□ 0.31
VPS13AQ96RL7 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
VPS13AQ96RL7 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VPS13AQ96RL7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
VPS13AQ96RL7 PC-208ENST00000529047 1607 ntTSL 3 BASIC17■□□□□ 0.31
VPS13AQ96RL7 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17■□□□□ 0.31
VPS13AQ96RL7 API5-211ENST00000534695 560 ntTSL 5 BASIC17■□□□□ 0.31
VPS13AQ96RL7 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC17■□□□□ 0.31
VPS13AQ96RL7 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17■□□□□ 0.31
VPS13AQ96RL7 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17■□□□□ 0.31
VPS13AQ96RL7 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17■□□□□ 0.31
VPS13AQ96RL7 MIR6080-201ENST00000617359 66 ntBASIC17■□□□□ 0.31
VPS13AQ96RL7 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17■□□□□ 0.31
VPS13AQ96RL7 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
VPS13AQ96RL7 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS13AQ96RL7 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17■□□□□ 0.31
VPS13AQ96RL7 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VPS13AQ96RL7 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 AC027369.6-201ENST00000525520 931 ntBASIC16.99■□□□□ 0.31
VPS13AQ96RL7 AC140912.1-201ENST00000577171 1054 ntBASIC16.99■□□□□ 0.31
VPS13AQ96RL7 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms