Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 AMT-250ENST00000637682 1823 ntTSL 5 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 AC117947.1-201ENST00000427448 529 ntBASIC13.07□□□□□ -0.32
LINC00477Q96M19 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 GUSBP12-201ENST00000513727 720 ntBASIC13.07□□□□□ -0.32
LINC00477Q96M19 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 AL390719.2-201ENST00000606993 987 ntBASIC13.07□□□□□ -0.32
LINC00477Q96M19 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC13.07□□□□□ -0.32
LINC00477Q96M19 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00477Q96M19 AC011676.5-201ENST00000624864 2660 ntBASIC13.06□□□□□ -0.32
LINC00477Q96M19 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.06□□□□□ -0.32
LINC00477Q96M19 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 AC012306.2-201ENST00000609350 630 ntBASIC13.06□□□□□ -0.32
LINC00477Q96M19 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 AC073912.3-201ENST00000624414 853 ntBASIC13.06□□□□□ -0.32
LINC00477Q96M19 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00477Q96M19 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
LINC00477Q96M19 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 AC073508.3-201ENST00000619697 1419 ntBASIC13.05□□□□□ -0.32
LINC00477Q96M19 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms