Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.58■□□□□ 0.09
SNRNP40Q96DI7 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.58■□□□□ 0.09
SNRNP40Q96DI7 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SNRNP40Q96DI7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 AC002056.1-201ENST00000395613 760 ntBASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 AL627223.1-201ENST00000416693 442 ntBASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 ADH5P3-201ENST00000433842 1137 ntBASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 RNA5SP421-201ENST00000516864 134 ntBASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 AC069262.1-201ENST00000539058 672 ntBASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 AC026120.1-201ENST00000611536 926 ntBASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SNRNP40Q96DI7 AC093503.3-201ENST00000624917 2352 ntBASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 TNXA-203ENST00000507684 2038 ntBASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 AC067863.1-201ENST00000494933 530 ntBASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 DUX4L27-201ENST00000554796 1261 ntBASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 AC015911.4-201ENST00000588022 1070 ntBASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 AL390955.2-201ENST00000603032 514 ntBASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 AC009093.7-201ENST00000623853 1223 ntBASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 Z92544.3-201ENST00000624747 417 ntBASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 POR-209ENST00000439269 1858 ntTSL 2 BASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 FLYWCH1P1-201ENST00000460917 1874 ntBASIC15.57■□□□□ 0.08
SNRNP40Q96DI7 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 AL671277.1-201ENST00000429656 993 ntBASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 AC005237.2-201ENST00000434368 219 ntBASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 AJ011932.1-201ENST00000621707 465 ntBASIC15.56■□□□□ 0.08
SNRNP40Q96DI7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms