Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS3Q969F9 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS3Q969F9 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.29■□□□□ 0.68
HPS3Q969F9 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS3Q969F9 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HPS3Q969F9 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HPS3Q969F9 AC020916.1-201ENST00000587762 1774 ntBASIC19.29■□□□□ 0.68
HPS3Q969F9 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.29■□□□□ 0.68
HPS3Q969F9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HPS3Q969F9 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
HPS3Q969F9 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS3Q969F9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.29■□□□□ 0.68
HPS3Q969F9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
HPS3Q969F9 AC004817.3-201ENST00000602957 2129 ntBASIC19.28■□□□□ 0.68
HPS3Q969F9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
HPS3Q969F9 AC099398.1-201ENST00000567919 2776 ntBASIC19.28■□□□□ 0.68
HPS3Q969F9 AC009336.1-201ENST00000608941 1553 ntBASIC19.28■□□□□ 0.68
HPS3Q969F9 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.28■□□□□ 0.68
HPS3Q969F9 AL135999.2-201ENST00000622438 1686 ntBASIC19.28■□□□□ 0.68
HPS3Q969F9 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.28■□□□□ 0.68
HPS3Q969F9 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.28■□□□□ 0.68
HPS3Q969F9 STK19B-204ENST00000512515 211 ntBASIC19.28■□□□□ 0.68
HPS3Q969F9 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.28■□□□□ 0.68
HPS3Q969F9 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.28■□□□□ 0.68
HPS3Q969F9 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.28■□□□□ 0.68
HPS3Q969F9 MIR3652-201ENST00000579335 131 ntBASIC19.28■□□□□ 0.68
HPS3Q969F9 AP000867.4-201ENST00000641616 219 ntBASIC19.28■□□□□ 0.68
HPS3Q969F9 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HPS3Q969F9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.28■□□□□ 0.68
HPS3Q969F9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HPS3Q969F9 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HPS3Q969F9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.28■□□□□ 0.68
HPS3Q969F9 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.28■□□□□ 0.68
HPS3Q969F9 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS3Q969F9 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
HPS3Q969F9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.27■□□□□ 0.68
HPS3Q969F9 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.27■□□□□ 0.68
HPS3Q969F9 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
HPS3Q969F9 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
HPS3Q969F9 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.27■□□□□ 0.68
HPS3Q969F9 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 AC132008.2-207ENST00000454517 770 ntBASIC19.27■□□□□ 0.68
HPS3Q969F9 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.27■□□□□ 0.68
HPS3Q969F9 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.27■□□□□ 0.68
HPS3Q969F9 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.27■□□□□ 0.68
HPS3Q969F9 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 AL591684.3-201ENST00000605187 298 ntBASIC19.27■□□□□ 0.68
HPS3Q969F9 AP001269.4-201ENST00000609611 512 ntBASIC19.27■□□□□ 0.68
HPS3Q969F9 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.27■□□□□ 0.68
HPS3Q969F9 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.27■□□□□ 0.68
HPS3Q969F9 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
HPS3Q969F9 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
HPS3Q969F9 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
HPS3Q969F9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HPS3Q969F9 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HPS3Q969F9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
HPS3Q969F9 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HPS3Q969F9 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HPS3Q969F9 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
HPS3Q969F9 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HPS3Q969F9 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
HPS3Q969F9 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 AD000864.1-201ENST00000624076 2295 ntBASIC19.26■□□□□ 0.67
HPS3Q969F9 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.26■□□□□ 0.67
HPS3Q969F9 AC093525.9-201ENST00000624961 1746 ntBASIC19.26■□□□□ 0.67
HPS3Q969F9 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.26■□□□□ 0.67
HPS3Q969F9 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.26■□□□□ 0.67
HPS3Q969F9 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
HPS3Q969F9 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 KLF4P1-201ENST00000412782 1185 ntBASIC19.26■□□□□ 0.67
HPS3Q969F9 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.26■□□□□ 0.67
HPS3Q969F9 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.26■□□□□ 0.67
HPS3Q969F9 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.26■□□□□ 0.67
HPS3Q969F9 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.26■□□□□ 0.67
HPS3Q969F9 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.26■□□□□ 0.67
HPS3Q969F9 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms