Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 AC092437.1-201ENST00000624794 1048 ntBASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 AC023908.3-201ENST00000564211 3047 ntBASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 MIR663A-201ENST00000385250 93 ntBASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 SLC29A4P1-201ENST00000398760 971 ntBASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 CDCA4P2-201ENST00000441182 718 ntBASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28AQ8IWP9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 AC093787.1-201ENST00000450396 207 ntBASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 AL121832.2-201ENST00000610979 668 ntBASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms