Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21.64■■□□□ 1.06
UBE3BQ7Z3V4 AC134043.2-201ENST00000624206 2238 ntBASIC21.64■■□□□ 1.06
UBE3BQ7Z3V4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
UBE3BQ7Z3V4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 AC004832.2-201ENST00000426397 482 ntBASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 AC002347.1-201ENST00000569543 541 ntBASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UBE3BQ7Z3V4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 UPF3AP3-201ENST00000420996 769 ntBASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 GGTLC5P-201ENST00000617623 998 ntBASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 AC092865.6-201ENST00000642101 219 ntBASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
UBE3BQ7Z3V4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 GPX1P2-201ENST00000429271 606 ntBASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 AC055717.3-201ENST00000622967 595 ntBASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.62■■□□□ 1.05
UBE3BQ7Z3V4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 RPSAP43-201ENST00000402237 625 ntBASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 HNRNPA1P28-201ENST00000424481 961 ntBASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 AL513190.1-201ENST00000621254 727 ntBASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 AC010507.1-201ENST00000633895 436 ntBASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
UBE3BQ7Z3V4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms