Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 TSPY16P-201ENST00000449843 468 ntBASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 KRT8P23-201ENST00000560090 1207 ntBASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 AC140878.1-201ENST00000565277 250 ntBASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 RN7SL204P-201ENST00000582831 262 ntBASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.57■□□□□ 0.56
CNKSR3Q6P9H4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 AC063926.2-201ENST00000623766 1308 ntBASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 HMGA1P7-201ENST00000406908 502 ntBASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CNKSR3Q6P9H4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AC005412.3-201ENST00000580309 715 ntBASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 LINC01451-201ENST00000623792 534 ntBASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CNKSR3Q6P9H4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNKSR3Q6P9H4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms