Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A3Q01955 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A3Q01955 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.57■□□□□ 0.4
COL4A3Q01955 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
COL4A3Q01955 AC069335.1-201ENST00000489972 472 ntBASIC17.57■□□□□ 0.4
COL4A3Q01955 MEIS3P1-201ENST00000495167 958 ntBASIC17.57■□□□□ 0.4
COL4A3Q01955 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.57■□□□□ 0.4
COL4A3Q01955 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A3Q01955 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A3Q01955 AC012645.4-201ENST00000610691 1061 ntBASIC17.57■□□□□ 0.4
COL4A3Q01955 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.57■□□□□ 0.4
COL4A3Q01955 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.57■□□□□ 0.4
COL4A3Q01955 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A3Q01955 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A3Q01955 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A3Q01955 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A3Q01955 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.56■□□□□ 0.4
COL4A3Q01955 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
COL4A3Q01955 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A3Q01955 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3Q01955 AL354751.1-201ENST00000412768 1863 ntBASIC17.56■□□□□ 0.4
COL4A3Q01955 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3Q01955 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3Q01955 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A3Q01955 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.56■□□□□ 0.4
COL4A3Q01955 AC079140.1-201ENST00000508039 487 ntBASIC17.56■□□□□ 0.4
COL4A3Q01955 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3Q01955 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3Q01955 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A3Q01955 AL139327.4-201ENST00000612362 153 ntBASIC17.56■□□□□ 0.4
COL4A3Q01955 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
COL4A3Q01955 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3Q01955 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3Q01955 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A3Q01955 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3Q01955 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3Q01955 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3Q01955 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
COL4A3Q01955 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3Q01955 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
COL4A3Q01955 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
COL4A3Q01955 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A3Q01955 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
COL4A3Q01955 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A3Q01955 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL4A3Q01955 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 AC140658.5-201ENST00000438532 169 ntBASIC17.55■□□□□ 0.4
COL4A3Q01955 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.55■□□□□ 0.4
COL4A3Q01955 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A3Q01955 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL4A3Q01955 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
COL4A3Q01955 AC015911.4-201ENST00000588022 1070 ntBASIC17.55■□□□□ 0.4
COL4A3Q01955 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A3Q01955 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A3Q01955 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
COL4A3Q01955 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A3Q01955 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A3Q01955 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A3Q01955 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL4A3Q01955 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
COL4A3Q01955 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 TREML5P-201ENST00000421694 576 ntBASIC17.55■□□□□ 0.4
COL4A3Q01955 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A3Q01955 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.55■□□□□ 0.4
COL4A3Q01955 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A3Q01955 AC087641.1-201ENST00000557561 1021 ntBASIC17.55■□□□□ 0.4
COL4A3Q01955 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3Q01955 AL390754.1-201ENST00000619088 582 ntBASIC17.55■□□□□ 0.4
COL4A3Q01955 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A3Q01955 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A3Q01955 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A3Q01955 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.54■□□□□ 0.4
COL4A3Q01955 FAM185BP-201ENST00000443595 716 ntBASIC17.54■□□□□ 0.4
COL4A3Q01955 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A3Q01955 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A3Q01955 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.54■□□□□ 0.4
COL4A3Q01955 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A3Q01955 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A3Q01955 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms