Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.69■□□□□ 0.74
CCNA1P78396 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.69■□□□□ 0.74
CCNA1P78396 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.69■□□□□ 0.74
CCNA1P78396 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCNA1P78396 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCNA1P78396 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCNA1P78396 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCNA1P78396 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCNA1P78396 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.68■□□□□ 0.74
CCNA1P78396 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.68■□□□□ 0.74
CCNA1P78396 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CCNA1P78396 AL035633.1-201ENST00000406139 838 ntBASIC19.68■□□□□ 0.74
CCNA1P78396 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.68■□□□□ 0.74
CCNA1P78396 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.68■□□□□ 0.74
CCNA1P78396 AC015911.4-201ENST00000588022 1070 ntBASIC19.68■□□□□ 0.74
CCNA1P78396 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.68■□□□□ 0.74
CCNA1P78396 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.68■□□□□ 0.74
CCNA1P78396 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCNA1P78396 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.68■□□□□ 0.74
CCNA1P78396 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CCNA1P78396 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.67■□□□□ 0.74
CCNA1P78396 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.67■□□□□ 0.74
CCNA1P78396 AC092474.2-201ENST00000424288 719 ntBASIC19.67■□□□□ 0.74
CCNA1P78396 AC005237.2-201ENST00000434368 219 ntBASIC19.67■□□□□ 0.74
CCNA1P78396 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.67■□□□□ 0.74
CCNA1P78396 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.67■□□□□ 0.74
CCNA1P78396 RN7SL589P-201ENST00000481268 310 ntBASIC19.67■□□□□ 0.74
CCNA1P78396 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.67■□□□□ 0.74
CCNA1P78396 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.67■□□□□ 0.74
CCNA1P78396 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.67■□□□□ 0.74
CCNA1P78396 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.67■□□□□ 0.74
CCNA1P78396 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
CCNA1P78396 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.67■□□□□ 0.74
CCNA1P78396 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.67■□□□□ 0.74
CCNA1P78396 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CCNA1P78396 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCNA1P78396 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCNA1P78396 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCNA1P78396 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.66■□□□□ 0.74
CCNA1P78396 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCNA1P78396 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.66■□□□□ 0.74
CCNA1P78396 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.66■□□□□ 0.74
CCNA1P78396 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.66■□□□□ 0.74
CCNA1P78396 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.66■□□□□ 0.74
CCNA1P78396 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.66■□□□□ 0.74
CCNA1P78396 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.66■□□□□ 0.74
CCNA1P78396 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
CCNA1P78396 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.66■□□□□ 0.74
CCNA1P78396 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.66■□□□□ 0.74
CCNA1P78396 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCNA1P78396 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 LINC01451-201ENST00000623792 534 ntBASIC19.66■□□□□ 0.74
CCNA1P78396 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 REXO1L11P-201ENST00000620964 1927 ntBASIC19.66■□□□□ 0.74
CCNA1P78396 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CCNA1P78396 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.66■□□□□ 0.74
CCNA1P78396 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.66■□□□□ 0.74
CCNA1P78396 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.66■□□□□ 0.74
CCNA1P78396 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNA1P78396 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.66■□□□□ 0.74
CCNA1P78396 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCNA1P78396 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms