Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN1P58418 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
CLRN1P58418 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CLRN1P58418 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
CLRN1P58418 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CLRN1P58418 KRT17P6-201ENST00000453795 1220 ntBASIC15.59■□□□□ 0.09
CLRN1P58418 AP000867.3-201ENST00000524675 377 ntBASIC15.59■□□□□ 0.09
CLRN1P58418 TPM1-226ENST00000560959 925 ntTSL 2 BASIC15.59■□□□□ 0.09
CLRN1P58418 AC074051.2-201ENST00000565115 352 ntBASIC15.59■□□□□ 0.09
CLRN1P58418 AP005901.3-202ENST00000581653 237 ntBASIC15.59■□□□□ 0.09
CLRN1P58418 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.59■□□□□ 0.09
CLRN1P58418 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.59■□□□□ 0.09
CLRN1P58418 AC093458.2-201ENST00000623150 629 ntBASIC15.59■□□□□ 0.09
CLRN1P58418 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN1P58418 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN1P58418 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN1P58418 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CLRN1P58418 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN1P58418 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CLRN1P58418 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN1P58418 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.59■□□□□ 0.09
CLRN1P58418 AC108860.2-201ENST00000562760 2183 ntBASIC15.59■□□□□ 0.09
CLRN1P58418 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.59■□□□□ 0.09
CLRN1P58418 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.59■□□□□ 0.09
CLRN1P58418 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.59■□□□□ 0.09
CLRN1P58418 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN1P58418 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.59■□□□□ 0.09
CLRN1P58418 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.59■□□□□ 0.09
CLRN1P58418 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CLRN1P58418 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CLRN1P58418 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
CLRN1P58418 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CLRN1P58418 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.58■□□□□ 0.09
CLRN1P58418 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CLRN1P58418 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
CLRN1P58418 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CLRN1P58418 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.58■□□□□ 0.08
CLRN1P58418 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.58■□□□□ 0.08
CLRN1P58418 AC104819.1-201ENST00000504587 486 ntBASIC15.58■□□□□ 0.08
CLRN1P58418 AC096582.2-201ENST00000510860 516 ntBASIC15.58■□□□□ 0.08
CLRN1P58418 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.58■□□□□ 0.08
CLRN1P58418 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.58■□□□□ 0.08
CLRN1P58418 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.58■□□□□ 0.08
CLRN1P58418 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC15.58■□□□□ 0.08
CLRN1P58418 AC019129.2-201ENST00000609837 1235 ntBASIC15.58■□□□□ 0.08
CLRN1P58418 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.58■□□□□ 0.08
CLRN1P58418 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CLRN1P58418 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.58■□□□□ 0.08
CLRN1P58418 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 AC016396.2-201ENST00000562575 1417 ntBASIC15.58■□□□□ 0.08
CLRN1P58418 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CLRN1P58418 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.08
CLRN1P58418 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.58■□□□□ 0.08
CLRN1P58418 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 NSUN5P1-202ENST00000421140 1535 ntBASIC15.58■□□□□ 0.08
CLRN1P58418 NSUN5P2-203ENST00000457352 1529 ntBASIC15.58■□□□□ 0.08
CLRN1P58418 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CLRN1P58418 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN1P58418 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CLRN1P58418 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
CLRN1P58418 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
CLRN1P58418 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.57■□□□□ 0.08
CLRN1P58418 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN1P58418 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN1P58418 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN1P58418 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CLRN1P58418 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN1P58418 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.57■□□□□ 0.08
CLRN1P58418 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.57■□□□□ 0.08
CLRN1P58418 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN1P58418 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CLRN1P58418 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.57■□□□□ 0.08
CLRN1P58418 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms