Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.41■□□□□ 0.54
LHX1P48742 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.41■□□□□ 0.54
LHX1P48742 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LHX1P48742 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.41■□□□□ 0.54
LHX1P48742 AL138688.1-201ENST00000624851 1594 ntBASIC18.41■□□□□ 0.54
LHX1P48742 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.41■□□□□ 0.54
LHX1P48742 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
LHX1P48742 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.41■□□□□ 0.54
LHX1P48742 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LHX1P48742 AC018470.1-201ENST00000624790 3129 ntBASIC18.4■□□□□ 0.54
LHX1P48742 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LHX1P48742 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.4■□□□□ 0.54
LHX1P48742 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
LHX1P48742 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.4■□□□□ 0.54
LHX1P48742 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LHX1P48742 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.4■□□□□ 0.54
LHX1P48742 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
LHX1P48742 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.4■□□□□ 0.54
LHX1P48742 PTCHD3P3-201ENST00000403073 906 ntBASIC18.4■□□□□ 0.54
LHX1P48742 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.4■□□□□ 0.54
LHX1P48742 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.4■□□□□ 0.54
LHX1P48742 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LHX1P48742 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LHX1P48742 AC108751.1-201ENST00000490852 363 ntBASIC18.4■□□□□ 0.54
LHX1P48742 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.4■□□□□ 0.54
LHX1P48742 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
LHX1P48742 AC068880.1-201ENST00000507289 2297 ntBASIC18.4■□□□□ 0.54
LHX1P48742 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.4■□□□□ 0.54
LHX1P48742 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.4■□□□□ 0.54
LHX1P48742 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.4■□□□□ 0.54
LHX1P48742 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.4■□□□□ 0.54
LHX1P48742 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 AC016396.2-201ENST00000562575 1417 ntBASIC18.4■□□□□ 0.54
LHX1P48742 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
LHX1P48742 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
LHX1P48742 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
LHX1P48742 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
LHX1P48742 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.39■□□□□ 0.53
LHX1P48742 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
LHX1P48742 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
LHX1P48742 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.39■□□□□ 0.53
LHX1P48742 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.39■□□□□ 0.53
LHX1P48742 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.39■□□□□ 0.53
LHX1P48742 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
LHX1P48742 GGTLC5P-201ENST00000617623 998 ntBASIC18.39■□□□□ 0.53
LHX1P48742 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
LHX1P48742 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LHX1P48742 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.38■□□□□ 0.53
LHX1P48742 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.38■□□□□ 0.53
LHX1P48742 AL591424.1-201ENST00000442569 1213 ntBASIC18.38■□□□□ 0.53
LHX1P48742 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
LHX1P48742 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.38■□□□□ 0.53
LHX1P48742 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.38■□□□□ 0.53
LHX1P48742 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 AL671883.3-201ENST00000603274 991 ntBASIC18.38■□□□□ 0.53
LHX1P48742 AC027601.4-201ENST00000611259 610 ntBASIC18.38■□□□□ 0.53
LHX1P48742 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
LHX1P48742 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms