Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.08■□□□□ 0.48
PTPN9P43378 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN9P43378 LINC02012-201ENST00000608206 1725 ntBASIC18.08■□□□□ 0.48
PTPN9P43378 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN9P43378 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN9P43378 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN9P43378 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.08■□□□□ 0.48
PTPN9P43378 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.08■□□□□ 0.48
PTPN9P43378 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
PTPN9P43378 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.08■□□□□ 0.48
PTPN9P43378 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.07■□□□□ 0.48
PTPN9P43378 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
PTPN9P43378 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PTPN9P43378 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.07■□□□□ 0.48
PTPN9P43378 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.07■□□□□ 0.48
PTPN9P43378 AL022326.1-202ENST00000641533 845 ntBASIC18.07■□□□□ 0.48
PTPN9P43378 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 EGFEM1P-202ENST00000431685 1563 ntBASIC18.07■□□□□ 0.48
PTPN9P43378 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
PTPN9P43378 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN9P43378 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
PTPN9P43378 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN9P43378 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.06■□□□□ 0.48
PTPN9P43378 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.06■□□□□ 0.48
PTPN9P43378 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN9P43378 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN9P43378 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.06■□□□□ 0.48
PTPN9P43378 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
PTPN9P43378 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.06■□□□□ 0.48
PTPN9P43378 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.06■□□□□ 0.48
PTPN9P43378 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 BX005266.1-201ENST00000473402 457 ntBASIC18.06■□□□□ 0.48
PTPN9P43378 UNC93B7-201ENST00000509439 705 ntBASIC18.06■□□□□ 0.48
PTPN9P43378 AF238378.1-201ENST00000526806 358 ntBASIC18.06■□□□□ 0.48
PTPN9P43378 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN9P43378 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.06■□□□□ 0.48
PTPN9P43378 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN9P43378 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN9P43378 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.05■□□□□ 0.48
PTPN9P43378 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PTPN9P43378 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
PTPN9P43378 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 AC097637.2-201ENST00000624096 1997 ntBASIC18.05■□□□□ 0.48
PTPN9P43378 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.05■□□□□ 0.48
PTPN9P43378 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
PTPN9P43378 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.05■□□□□ 0.48
PTPN9P43378 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PTPN9P43378 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PTPN9P43378 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.05■□□□□ 0.48
PTPN9P43378 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
PTPN9P43378 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN9P43378 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.05■□□□□ 0.48
PTPN9P43378 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN9P43378 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.05■□□□□ 0.48
PTPN9P43378 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.05■□□□□ 0.48
PTPN9P43378 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN9P43378 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN9P43378 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN9P43378 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
PTPN9P43378 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN9P43378 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PTPN9P43378 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.04■□□□□ 0.48
PTPN9P43378 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms