Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HNF4AP41235 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
HNF4AP41235 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.91■□□□□ 0.3
HNF4AP41235 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.91■□□□□ 0.3
HNF4AP41235 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.91■□□□□ 0.3
HNF4AP41235 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.91■□□□□ 0.3
HNF4AP41235 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.91■□□□□ 0.3
HNF4AP41235 AC111152.3-201ENST00000569699 673 ntBASIC16.91■□□□□ 0.3
HNF4AP41235 AC109462.3-201ENST00000573934 613 ntBASIC16.91■□□□□ 0.3
HNF4AP41235 AC099336.1-202ENST00000602961 463 ntBASIC16.91■□□□□ 0.3
HNF4AP41235 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.91■□□□□ 0.3
HNF4AP41235 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HNF4AP41235 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
HNF4AP41235 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.91■□□□□ 0.3
HNF4AP41235 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HNF4AP41235 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 CROCCP1-201ENST00000426910 5675 ntBASIC16.9■□□□□ 0.3
HNF4AP41235 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
HNF4AP41235 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.9■□□□□ 0.3
HNF4AP41235 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.9■□□□□ 0.3
HNF4AP41235 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 AC096582.2-201ENST00000510860 516 ntBASIC16.9■□□□□ 0.3
HNF4AP41235 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 AC138894.3-201ENST00000603787 634 ntBASIC16.9■□□□□ 0.3
HNF4AP41235 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.9■□□□□ 0.3
HNF4AP41235 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HNF4AP41235 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HNF4AP41235 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
HNF4AP41235 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HNF4AP41235 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.89■□□□□ 0.3
HNF4AP41235 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
HNF4AP41235 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
HNF4AP41235 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
HNF4AP41235 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.89■□□□□ 0.29
HNF4AP41235 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
HNF4AP41235 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
HNF4AP41235 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HNF4AP41235 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.89■□□□□ 0.29
HNF4AP41235 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
HNF4AP41235 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
HNF4AP41235 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 IGHV3-47-201ENST00000425060 335 ntBASIC16.89■□□□□ 0.29
HNF4AP41235 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.89■□□□□ 0.29
HNF4AP41235 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.89■□□□□ 0.29
HNF4AP41235 AC012615.1-201ENST00000565797 1299 ntBASIC16.89■□□□□ 0.29
HNF4AP41235 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.89■□□□□ 0.29
HNF4AP41235 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.89■□□□□ 0.29
HNF4AP41235 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.89■□□□□ 0.29
HNF4AP41235 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
HNF4AP41235 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.89■□□□□ 0.29
HNF4AP41235 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.89■□□□□ 0.29
HNF4AP41235 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms