Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 AC092865.5-201ENST00000545435 363 ntBASIC15.96■□□□□ 0.15
RFC3P40938 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.96■□□□□ 0.15
RFC3P40938 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.96■□□□□ 0.15
RFC3P40938 AC073592.4-201ENST00000623827 446 ntBASIC15.96■□□□□ 0.15
RFC3P40938 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC15.96■□□□□ 0.15
RFC3P40938 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFC3P40938 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.96■□□□□ 0.14
RFC3P40938 AL353593.2-201ENST00000602529 1483 ntBASIC15.96■□□□□ 0.14
RFC3P40938 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.96■□□□□ 0.14
RFC3P40938 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
RFC3P40938 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
RFC3P40938 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
RFC3P40938 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
RFC3P40938 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
RFC3P40938 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
RFC3P40938 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
RFC3P40938 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
RFC3P40938 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 BX276092.7-203ENST00000637198 1536 ntBASIC15.95■□□□□ 0.14
RFC3P40938 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.95■□□□□ 0.14
RFC3P40938 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.95■□□□□ 0.14
RFC3P40938 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.95■□□□□ 0.14
RFC3P40938 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 UNC93B6-202ENST00000528242 690 ntBASIC15.95■□□□□ 0.14
RFC3P40938 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.95■□□□□ 0.14
RFC3P40938 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.95■□□□□ 0.14
RFC3P40938 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.95■□□□□ 0.14
RFC3P40938 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.95■□□□□ 0.14
RFC3P40938 AL356488.2-201ENST00000602755 427 ntBASIC15.95■□□□□ 0.14
RFC3P40938 AC140113.2-201ENST00000604370 208 ntBASIC15.95■□□□□ 0.14
RFC3P40938 Z83851.2-201ENST00000609564 659 ntBASIC15.95■□□□□ 0.14
RFC3P40938 GPALPP1-207ENST00000611650 899 ntBASIC15.95■□□□□ 0.14
RFC3P40938 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
RFC3P40938 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
RFC3P40938 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RFC3P40938 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 PMS2P7-201ENST00000506558 1336 ntBASIC15.94■□□□□ 0.14
RFC3P40938 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
RFC3P40938 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.94■□□□□ 0.14
RFC3P40938 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC15.94■□□□□ 0.14
RFC3P40938 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 MED15P5-201ENST00000423150 992 ntBASIC15.94■□□□□ 0.14
RFC3P40938 AC007967.2-201ENST00000432613 625 ntBASIC15.94■□□□□ 0.14
RFC3P40938 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.94■□□□□ 0.14
RFC3P40938 AC034105.1-201ENST00000563488 319 ntBASIC15.94■□□□□ 0.14
RFC3P40938 AC145285.3-201ENST00000564603 959 ntBASIC15.94■□□□□ 0.14
RFC3P40938 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.94■□□□□ 0.14
RFC3P40938 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 MIR1199-201ENST00000621445 119 ntBASIC15.94■□□□□ 0.14
RFC3P40938 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
RFC3P40938 AC124067.4-201ENST00000519691 2379 ntBASIC15.94■□□□□ 0.14
RFC3P40938 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.94■□□□□ 0.14
RFC3P40938 AC138028.4-201ENST00000564984 1845 ntBASIC15.94■□□□□ 0.14
RFC3P40938 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.94■□□□□ 0.14
RFC3P40938 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
RFC3P40938 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFC3P40938 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
RFC3P40938 SIGLEC16-201ENST00000599858 1437 ntBASIC15.94■□□□□ 0.14
RFC3P40938 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.93■□□□□ 0.14
RFC3P40938 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms