Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SCN4AP35499 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.32■□□□□ 0.84
SCN4AP35499 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.31■□□□□ 0.84
SCN4AP35499 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.31■□□□□ 0.84
SCN4AP35499 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.31■□□□□ 0.84
SCN4AP35499 HCG4-201ENST00000418983 998 ntBASIC20.31■□□□□ 0.84
SCN4AP35499 AC142381.1-201ENST00000426099 345 ntBASIC20.31■□□□□ 0.84
SCN4AP35499 AL353779.1-201ENST00000434793 351 ntBASIC20.31■□□□□ 0.84
SCN4AP35499 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.31■□□□□ 0.84
SCN4AP35499 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 INE1-201ENST00000456273 945 ntBASIC20.31■□□□□ 0.84
SCN4AP35499 AC119751.2-201ENST00000504529 210 ntBASIC20.31■□□□□ 0.84
SCN4AP35499 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SCN4AP35499 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.31■□□□□ 0.84
SCN4AP35499 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SCN4AP35499 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.31■□□□□ 0.84
SCN4AP35499 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.31■□□□□ 0.84
SCN4AP35499 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.31■□□□□ 0.84
SCN4AP35499 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.31■□□□□ 0.84
SCN4AP35499 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SCN4AP35499 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCN4AP35499 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SCN4AP35499 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SCN4AP35499 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.3■□□□□ 0.84
SCN4AP35499 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 AC018529.1-201ENST00000613063 361 ntBASIC20.3■□□□□ 0.84
SCN4AP35499 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20.3■□□□□ 0.84
SCN4AP35499 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.3■□□□□ 0.84
SCN4AP35499 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.3■□□□□ 0.84
SCN4AP35499 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.3■□□□□ 0.84
SCN4AP35499 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.3■□□□□ 0.84
SCN4AP35499 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SCN4AP35499 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SCN4AP35499 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.3■□□□□ 0.84
SCN4AP35499 SLC25A6P5-201ENST00000435663 894 ntBASIC20.3■□□□□ 0.84
SCN4AP35499 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SCN4AP35499 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.3■□□□□ 0.84
SCN4AP35499 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.3■□□□□ 0.84
SCN4AP35499 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.3■□□□□ 0.84
SCN4AP35499 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.3■□□□□ 0.84
SCN4AP35499 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCN4AP35499 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.29■□□□□ 0.84
SCN4AP35499 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.29■□□□□ 0.84
SCN4AP35499 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCN4AP35499 AP3S2-216ENST00000617003 1561 ntBASIC20.29■□□□□ 0.84
SCN4AP35499 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.29■□□□□ 0.84
SCN4AP35499 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.29■□□□□ 0.84
SCN4AP35499 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCN4AP35499 AL353732.1-201ENST00000569618 1459 ntBASIC20.29■□□□□ 0.84
SCN4AP35499 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.29■□□□□ 0.84
SCN4AP35499 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.29■□□□□ 0.84
SCN4AP35499 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.29■□□□□ 0.84
SCN4AP35499 MIR658-201ENST00000385210 100 ntBASIC20.29■□□□□ 0.84
SCN4AP35499 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC20.29■□□□□ 0.84
SCN4AP35499 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.29■□□□□ 0.84
SCN4AP35499 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SCN4AP35499 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.29■□□□□ 0.84
SCN4AP35499 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
SCN4AP35499 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCN4AP35499 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.29■□□□□ 0.84
SCN4AP35499 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.29■□□□□ 0.84
SCN4AP35499 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.29■□□□□ 0.84
SCN4AP35499 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.29■□□□□ 0.84
SCN4AP35499 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SCN4AP35499 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.28■□□□□ 0.84
SCN4AP35499 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCN4AP35499 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SCN4AP35499 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SCN4AP35499 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.28■□□□□ 0.84
SCN4AP35499 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.28■□□□□ 0.84
SCN4AP35499 HLA-V-204ENST00000476601 1289 ntBASIC20.28■□□□□ 0.84
SCN4AP35499 AC092658.1-201ENST00000505836 891 ntBASIC20.28■□□□□ 0.84
SCN4AP35499 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
SCN4AP35499 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.28■□□□□ 0.84
SCN4AP35499 RARRES2P9-201ENST00000565168 469 ntBASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms