Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXD3P31249 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HOXD3P31249 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 AL049757.1-201ENST00000616842 1596 ntBASIC13.49□□□□□ -0.25
HOXD3P31249 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC13.49□□□□□ -0.25
HOXD3P31249 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HOXD3P31249 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXD3P31249 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC13.49□□□□□ -0.25
HOXD3P31249 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
HOXD3P31249 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXD3P31249 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 AC002558.1-201ENST00000488906 803 ntBASIC13.49□□□□□ -0.25
HOXD3P31249 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.49□□□□□ -0.25
HOXD3P31249 IGHV3-22-201ENST00000520721 359 ntBASIC13.49□□□□□ -0.25
HOXD3P31249 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.49□□□□□ -0.25
HOXD3P31249 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC13.49□□□□□ -0.25
HOXD3P31249 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 AC010327.4-202ENST00000591484 748 ntBASIC13.49□□□□□ -0.25
HOXD3P31249 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 AC019129.2-201ENST00000609837 1235 ntBASIC13.49□□□□□ -0.25
HOXD3P31249 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXD3P31249 AC073592.5-201ENST00000624854 528 ntBASIC13.49□□□□□ -0.25
HOXD3P31249 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXD3P31249 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HOXD3P31249 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 PMPCAP1-201ENST00000508114 1576 ntBASIC13.49□□□□□ -0.25
HOXD3P31249 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HOXD3P31249 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
HOXD3P31249 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXD3P31249 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HOXD3P31249 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD3P31249 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD3P31249 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 CD276-203ENST00000537340 2439 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD3P31249 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.48□□□□□ -0.25
HOXD3P31249 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 AC005104.2-201ENST00000427818 678 ntBASIC13.48□□□□□ -0.25
HOXD3P31249 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXD3P31249 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.48□□□□□ -0.25
HOXD3P31249 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD3P31249 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD3P31249 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.48□□□□□ -0.25
HOXD3P31249 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
HOXD3P31249 AC025062.2-201ENST00000605477 670 ntBASIC13.48□□□□□ -0.25
HOXD3P31249 AL139288.1-201ENST00000623748 933 ntBASIC13.48□□□□□ -0.25
HOXD3P31249 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 AC006116.8-202ENST00000587620 1550 ntBASIC13.48□□□□□ -0.25
HOXD3P31249 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXD3P31249 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD3P31249 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXD3P31249 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 FUT8-AS1-201ENST00000621019 1521 ntBASIC13.48□□□□□ -0.25
HOXD3P31249 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD3P31249 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXD3P31249 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXD3P31249 AL353593.2-201ENST00000602529 1483 ntBASIC13.48□□□□□ -0.25
HOXD3P31249 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD3P31249 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD3P31249 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD3P31249 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXD3P31249 AC008764.6-201ENST00000595909 2069 ntBASIC13.48□□□□□ -0.25
HOXD3P31249 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
HOXD3P31249 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXD3P31249 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD3P31249 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD3P31249 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXD3P31249 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms