Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFX1P22670 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RFX1P22670 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
RFX1P22670 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
RFX1P22670 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
RFX1P22670 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.97■□□□□ 0.63
RFX1P22670 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
RFX1P22670 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RFX1P22670 IGHV3-47-201ENST00000425060 335 ntBASIC18.97■□□□□ 0.63
RFX1P22670 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.97■□□□□ 0.63
RFX1P22670 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.97■□□□□ 0.63
RFX1P22670 AC092183.1-201ENST00000469884 875 ntBASIC18.97■□□□□ 0.63
RFX1P22670 RNPS1P1-201ENST00000507437 918 ntBASIC18.97■□□□□ 0.63
RFX1P22670 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.97■□□□□ 0.63
RFX1P22670 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.97■□□□□ 0.63
RFX1P22670 TP73-AS1-207ENST00000624167 988 ntBASIC18.97■□□□□ 0.63
RFX1P22670 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX1P22670 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.97■□□□□ 0.63
RFX1P22670 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.97■□□□□ 0.63
RFX1P22670 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
RFX1P22670 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.96■□□□□ 0.63
RFX1P22670 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.96■□□□□ 0.63
RFX1P22670 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RFX1P22670 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
RFX1P22670 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
RFX1P22670 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.96■□□□□ 0.63
RFX1P22670 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.96■□□□□ 0.63
RFX1P22670 KRT18P67-201ENST00000432816 1264 ntBASIC18.96■□□□□ 0.63
RFX1P22670 AC122714.2-201ENST00000502787 707 ntBASIC18.96■□□□□ 0.63
RFX1P22670 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.96■□□□□ 0.63
RFX1P22670 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.96■□□□□ 0.63
RFX1P22670 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.96■□□□□ 0.63
RFX1P22670 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.96■□□□□ 0.63
RFX1P22670 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RFX1P22670 AC125634.1-201ENST00000438758 1403 ntBASIC18.96■□□□□ 0.63
RFX1P22670 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.96■□□□□ 0.63
RFX1P22670 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.96■□□□□ 0.63
RFX1P22670 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.96■□□□□ 0.63
RFX1P22670 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
RFX1P22670 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.96■□□□□ 0.63
RFX1P22670 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.96■□□□□ 0.63
RFX1P22670 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RFX1P22670 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX1P22670 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX1P22670 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.95■□□□□ 0.62
RFX1P22670 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.95■□□□□ 0.62
RFX1P22670 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX1P22670 PRORSD1P-202ENST00000563365 2154 ntBASIC18.95■□□□□ 0.62
RFX1P22670 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RFX1P22670 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 AC007967.3-201ENST00000434308 558 ntBASIC18.95■□□□□ 0.62
RFX1P22670 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.95■□□□□ 0.62
RFX1P22670 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
RFX1P22670 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 AL591684.3-201ENST00000605187 298 ntBASIC18.95■□□□□ 0.62
RFX1P22670 AL138831.2-201ENST00000606564 490 ntBASIC18.95■□□□□ 0.62
RFX1P22670 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.95■□□□□ 0.62
RFX1P22670 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RFX1P22670 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX1P22670 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX1P22670 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX1P22670 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RFX1P22670 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX1P22670 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms