Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.79■□□□□ 0.44
COL9A1P20849 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL9A1P20849 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.78■□□□□ 0.44
COL9A1P20849 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.78■□□□□ 0.44
COL9A1P20849 AL020989.1-201ENST00000422979 469 ntBASIC17.78■□□□□ 0.44
COL9A1P20849 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
COL9A1P20849 FAM58DP-201ENST00000428076 619 ntBASIC17.78■□□□□ 0.44
COL9A1P20849 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL9A1P20849 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL9A1P20849 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL9A1P20849 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.78■□□□□ 0.44
COL9A1P20849 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 MIR4259-201ENST00000584466 101 ntBASIC17.78■□□□□ 0.44
COL9A1P20849 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL9A1P20849 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.78■□□□□ 0.44
COL9A1P20849 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.78■□□□□ 0.44
COL9A1P20849 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.78■□□□□ 0.44
COL9A1P20849 AC100803.2-201ENST00000562459 1963 ntBASIC17.78■□□□□ 0.44
COL9A1P20849 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL9A1P20849 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.78■□□□□ 0.44
COL9A1P20849 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.78■□□□□ 0.44
COL9A1P20849 AC008677.1-201ENST00000519230 1561 ntBASIC17.78■□□□□ 0.44
COL9A1P20849 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL9A1P20849 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.78■□□□□ 0.44
COL9A1P20849 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.78■□□□□ 0.44
COL9A1P20849 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.77■□□□□ 0.44
COL9A1P20849 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.77■□□□□ 0.44
COL9A1P20849 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.77■□□□□ 0.44
COL9A1P20849 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL9A1P20849 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
COL9A1P20849 AL512384.1-201ENST00000406683 331 ntBASIC17.77■□□□□ 0.44
COL9A1P20849 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.77■□□□□ 0.44
COL9A1P20849 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 RBPMS2P1-201ENST00000437762 623 ntBASIC17.77■□□□□ 0.44
COL9A1P20849 SPDYE11-202ENST00000450699 704 ntBASIC17.77■□□□□ 0.44
COL9A1P20849 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.77■□□□□ 0.44
COL9A1P20849 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.77■□□□□ 0.44
COL9A1P20849 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.77■□□□□ 0.44
COL9A1P20849 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
COL9A1P20849 RHOQP1-201ENST00000555758 579 ntBASIC17.77■□□□□ 0.44
COL9A1P20849 SPDYE9P-201ENST00000570642 692 ntBASIC17.77■□□□□ 0.44
COL9A1P20849 RN7SL219P-201ENST00000582872 296 ntBASIC17.77■□□□□ 0.44
COL9A1P20849 AC103810.3-201ENST00000583567 96 ntBASIC17.77■□□□□ 0.44
COL9A1P20849 SPDYE10P-202ENST00000612005 668 ntBASIC17.77■□□□□ 0.44
COL9A1P20849 SPDYE8P-202ENST00000612377 668 ntBASIC17.77■□□□□ 0.44
COL9A1P20849 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.77■□□□□ 0.44
COL9A1P20849 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL9A1P20849 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
COL9A1P20849 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
COL9A1P20849 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.77■□□□□ 0.43
COL9A1P20849 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
COL9A1P20849 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL9A1P20849 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL9A1P20849 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.77■□□□□ 0.43
COL9A1P20849 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL9A1P20849 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL9A1P20849 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL9A1P20849 AC093677.2-201ENST00000600169 1863 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.76■□□□□ 0.43
COL9A1P20849 AC006116.8-202ENST00000587620 1550 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 WIZP1-201ENST00000531444 2299 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL9A1P20849 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
COL9A1P20849 AC012497.1-201ENST00000429392 575 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 AC241585.1-201ENST00000433527 519 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.76■□□□□ 0.43
COL9A1P20849 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.76■□□□□ 0.43
COL9A1P20849 KRT8P48-201ENST00000515599 1220 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.76■□□□□ 0.43
COL9A1P20849 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.76■□□□□ 0.43
COL9A1P20849 AC132938.2-201ENST00000579188 680 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 AC019129.2-201ENST00000609837 1235 ntBASIC17.76■□□□□ 0.43
COL9A1P20849 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms