Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
APOBP04114 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
APOBP04114 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC10.71□□□□□ -0.69
APOBP04114 PARP8-206ENST00000503665 572 ntTSL 4 BASIC10.71□□□□□ -0.69
APOBP04114 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
APOBP04114 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC10.71□□□□□ -0.69
APOBP04114 MIR4538-201ENST00000581377 78 ntBASIC10.71□□□□□ -0.69
APOBP04114 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
APOBP04114 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
APOBP04114 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC10.71□□□□□ -0.7
APOBP04114 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC10.71□□□□□ -0.7
APOBP04114 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC10.71□□□□□ -0.7
APOBP04114 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
APOBP04114 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC10.71□□□□□ -0.7
APOBP04114 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
APOBP04114 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
APOBP04114 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.7
APOBP04114 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.7
APOBP04114 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
APOBP04114 DFFBP1-201ENST00000433250 979 ntBASIC10.71□□□□□ -0.7
APOBP04114 PARP8-218ENST00000513738 596 ntTSL 4 BASIC10.71□□□□□ -0.7
APOBP04114 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC10.71□□□□□ -0.7
APOBP04114 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC10.71□□□□□ -0.7
APOBP04114 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC10.71□□□□□ -0.7
APOBP04114 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC10.71□□□□□ -0.7
APOBP04114 AL031055.1-201ENST00000606362 631 ntBASIC10.71□□□□□ -0.7
APOBP04114 AMT-250ENST00000637682 1823 ntTSL 5 BASIC10.71□□□□□ -0.7
APOBP04114 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
APOBP04114 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
APOBP04114 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
APOBP04114 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
APOBP04114 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC10.7□□□□□ -0.7
APOBP04114 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC10.7□□□□□ -0.7
APOBP04114 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC10.7□□□□□ -0.7
APOBP04114 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 FOXO1B-201ENST00000504678 1527 ntBASIC10.7□□□□□ -0.7
APOBP04114 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC10.7□□□□□ -0.7
APOBP04114 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC10.7□□□□□ -0.7
APOBP04114 AL009183.1-201ENST00000603760 355 ntBASIC10.7□□□□□ -0.7
APOBP04114 COX11-210ENST00000639671 696 ntBASIC10.7□□□□□ -0.7
APOBP04114 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
APOBP04114 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC10.7□□□□□ -0.7
APOBP04114 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
APOBP04114 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC10.7□□□□□ -0.7
APOBP04114 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC10.7□□□□□ -0.7
APOBP04114 IGHV3-62-201ENST00000520057 340 ntBASIC10.7□□□□□ -0.7
APOBP04114 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC10.7□□□□□ -0.7
APOBP04114 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC10.7□□□□□ -0.7
APOBP04114 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC10.7□□□□□ -0.7
APOBP04114 RAB34-223ENST00000636154 730 ntTSL 2 BASIC10.7□□□□□ -0.7
APOBP04114 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 AC093677.2-201ENST00000600169 1863 ntBASIC10.7□□□□□ -0.7
APOBP04114 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
APOBP04114 AC129492.6-201ENST00000611383 1305 ntBASIC10.7□□□□□ -0.7
APOBP04114 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
APOBP04114 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
APOBP04114 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
APOBP04114 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
APOBP04114 AC241585.1-201ENST00000433527 519 ntBASIC10.7□□□□□ -0.7
APOBP04114 REEP4-207ENST00000523293 913 ntTSL 3 BASIC10.7□□□□□ -0.7
APOBP04114 AC027369.6-201ENST00000525520 931 ntBASIC10.7□□□□□ -0.7
APOBP04114 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
APOBP04114 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
APOBP04114 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC10.7□□□□□ -0.7
APOBP04114 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC10.69□□□□□ -0.7
APOBP04114 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC10.69□□□□□ -0.7
APOBP04114 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
APOBP04114 PTPA-220ENST00000436883 532 ntTSL 4 BASIC10.69□□□□□ -0.7
APOBP04114 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC10.69□□□□□ -0.7
APOBP04114 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC10.69□□□□□ -0.7
APOBP04114 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC10.69□□□□□ -0.7
APOBP04114 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC10.69□□□□□ -0.7
APOBP04114 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC10.69□□□□□ -0.7
APOBP04114 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC10.69□□□□□ -0.7
APOBP04114 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms