Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS4BO75351 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VPS4BO75351 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 AC106820.2-201ENST00000563775 3264 ntBASIC17.1■□□□□ 0.33
VPS4BO75351 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS4BO75351 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS4BO75351 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VPS4BO75351 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 CHCHD2P8-201ENST00000429873 447 ntBASIC17.1■□□□□ 0.33
VPS4BO75351 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS4BO75351 AP002383.4-201ENST00000442518 975 ntBASIC17.1■□□□□ 0.33
VPS4BO75351 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.1■□□□□ 0.33
VPS4BO75351 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.1■□□□□ 0.33
VPS4BO75351 AL662844.1-201ENST00000546340 181 ntBASIC17.1■□□□□ 0.33
VPS4BO75351 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VPS4BO75351 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VPS4BO75351 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS4BO75351 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
VPS4BO75351 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VPS4BO75351 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VPS4BO75351 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS4BO75351 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VPS4BO75351 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VPS4BO75351 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VPS4BO75351 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VPS4BO75351 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VPS4BO75351 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 TSPY19P-201ENST00000418461 509 ntBASIC17.09■□□□□ 0.33
VPS4BO75351 TSPY18P-201ENST00000441642 509 ntBASIC17.09■□□□□ 0.33
VPS4BO75351 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.09■□□□□ 0.33
VPS4BO75351 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.09■□□□□ 0.33
VPS4BO75351 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 AL732292.2-201ENST00000609649 430 ntBASIC17.09■□□□□ 0.33
VPS4BO75351 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VPS4BO75351 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.09■□□□□ 0.33
VPS4BO75351 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VPS4BO75351 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS4BO75351 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS4BO75351 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
VPS4BO75351 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VPS4BO75351 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
VPS4BO75351 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4BO75351 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
VPS4BO75351 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4BO75351 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4BO75351 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4BO75351 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4BO75351 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
VPS4BO75351 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4BO75351 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4BO75351 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS4BO75351 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
VPS4BO75351 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS4BO75351 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
VPS4BO75351 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS4BO75351 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
VPS4BO75351 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS4BO75351 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
VPS4BO75351 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.08■□□□□ 0.32
VPS4BO75351 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS4BO75351 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 AP000867.3-201ENST00000524675 377 ntBASIC17.08■□□□□ 0.32
VPS4BO75351 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.08■□□□□ 0.32
VPS4BO75351 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.08■□□□□ 0.32
VPS4BO75351 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.08■□□□□ 0.32
VPS4BO75351 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms