Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
HDAC3O15379 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HDAC3O15379 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC3O15379 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.97■□□□□ 0.31
HDAC3O15379 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 AC124947.2-201ENST00000547118 1133 ntBASIC16.97■□□□□ 0.31
HDAC3O15379 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.97■□□□□ 0.31
HDAC3O15379 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC3O15379 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HDAC3O15379 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
HDAC3O15379 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC3O15379 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC3O15379 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
HDAC3O15379 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.97■□□□□ 0.31
HDAC3O15379 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HDAC3O15379 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HDAC3O15379 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HDAC3O15379 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.96■□□□□ 0.31
HDAC3O15379 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 MYCLP1-201ENST00000372451 1075 ntBASIC16.96■□□□□ 0.31
HDAC3O15379 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 COX5BP2-201ENST00000392354 334 ntBASIC16.96■□□□□ 0.31
HDAC3O15379 HLA-F-220ENST00000434407 884 ntBASIC16.96■□□□□ 0.31
HDAC3O15379 AC068472.1-201ENST00000474589 881 ntBASIC16.96■□□□□ 0.31
HDAC3O15379 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.96■□□□□ 0.31
HDAC3O15379 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.96■□□□□ 0.31
HDAC3O15379 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HDAC3O15379 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDAC3O15379 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HDAC3O15379 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.96■□□□□ 0.3
HDAC3O15379 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
HDAC3O15379 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
HDAC3O15379 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.96■□□□□ 0.3
HDAC3O15379 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
HDAC3O15379 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.96■□□□□ 0.3
HDAC3O15379 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
HDAC3O15379 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.96■□□□□ 0.3
HDAC3O15379 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
HDAC3O15379 AC097374.2-201ENST00000618617 1306 ntBASIC16.96■□□□□ 0.3
HDAC3O15379 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
HDAC3O15379 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HDAC3O15379 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.95■□□□□ 0.3
HDAC3O15379 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HDAC3O15379 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.95■□□□□ 0.3
HDAC3O15379 TSPY15P-201ENST00000457163 923 ntBASIC16.95■□□□□ 0.3
HDAC3O15379 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.95■□□□□ 0.3
HDAC3O15379 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.95■□□□□ 0.3
HDAC3O15379 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.95■□□□□ 0.3
HDAC3O15379 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.95■□□□□ 0.3
HDAC3O15379 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms