Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 PCDH8P1-201ENST00000428983 2773 ntBASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 FAM8A6P-201ENST00000407496 1135 ntBASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 SLC25A3P1-201ENST00000443844 931 ntBASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 ZNF444P1-201ENST00000559497 298 ntBASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 AC010460.3-201ENST00000511359 1579 ntBASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 RNF216P1-203ENST00000404404 2427 ntBASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM49D1C9J1S8 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 STARP1-201ENST00000397973 869 ntBASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 COX11P1-201ENST00000489116 835 ntBASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 AL031432.5-201ENST00000641059 760 ntBASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM49D1C9J1S8 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.46■□□□□ 0.38
TRIM49D1C9J1S8 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.46■□□□□ 0.38
TRIM49D1C9J1S8 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
TRIM49D1C9J1S8 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms