Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.22■□□□□ 0.51
PCDHA3Q9Y5H8 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 AC090616.6-201ENST00000582640 721 ntBASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 KRT8P10-201ENST00000450021 1447 ntBASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHA3Q9Y5H8 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
PCDHA3Q9Y5H8 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
PCDHA3Q9Y5H8 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
PCDHA3Q9Y5H8 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 PCDHB19P-201ENST00000570871 2371 ntBASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 AC011498.5-201ENST00000592027 486 ntBASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHA3Q9Y5H8 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 FAM220CP-201ENST00000395253 831 ntBASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 AC111152.3-201ENST00000569699 673 ntBASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 STK25P1-201ENST00000585406 838 ntBASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms