Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 AC090616.6-201ENST00000582640 721 ntBASIC16.92■□□□□ 0.3
VPS4AQ9UN37 IGHV3-41-201ENST00000613121 348 ntBASIC16.92■□□□□ 0.3
VPS4AQ9UN37 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 AC079602.3-201ENST00000623931 403 ntBASIC16.92■□□□□ 0.3
VPS4AQ9UN37 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 PRORSD1P-202ENST00000563365 2154 ntBASIC16.92■□□□□ 0.3
VPS4AQ9UN37 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 HLA-A-201ENST00000376802 1334 ntBASIC16.92■□□□□ 0.3
VPS4AQ9UN37 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 AL391807.1-203ENST00000604392 2365 ntBASIC16.92■□□□□ 0.3
VPS4AQ9UN37 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 AL138688.1-201ENST00000624851 1594 ntBASIC16.91■□□□□ 0.3
VPS4AQ9UN37 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 AC113404.2-201ENST00000507884 177 ntBASIC16.91■□□□□ 0.3
VPS4AQ9UN37 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4AQ9UN37 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 Z69720.1-201ENST00000601483 472 ntBASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AF228730.7-201ENST00000641842 219 ntBASIC16.9■□□□□ 0.3
VPS4AQ9UN37 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VPS4AQ9UN37 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms