Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 MIR662-201ENST00000384847 95 ntBASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 LINC01311-201ENST00000565162 1445 ntBASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 LINC01238-205ENST00000567549 1107 ntBASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC39Q9UFE4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 TMPOP1-202ENST00000424642 1267 ntBASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 FLJ38576-201ENST00000623820 2459 ntBASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC39Q9UFE4 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 AC022616.7-201ENST00000525383 220 ntBASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 AC116407.2-201ENST00000613639 860 ntBASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 HYMAI.1-201ENST00000620949 238 ntBASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 AC133963.1-201ENST00000504166 1679 ntBASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC39Q9UFE4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC39Q9UFE4 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms