Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CNTN3Q9P232 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CNTN3Q9P232 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CNTN3Q9P232 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CNTN3Q9P232 AL590787.1-201ENST00000568856 1315 ntBASIC18.72■□□□□ 0.59
CNTN3Q9P232 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.72■□□□□ 0.59
CNTN3Q9P232 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CNTN3Q9P232 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CNTN3Q9P232 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CNTN3Q9P232 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CNTN3Q9P232 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CNTN3Q9P232 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.71■□□□□ 0.59
CNTN3Q9P232 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CNTN3Q9P232 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CNTN3Q9P232 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CNTN3Q9P232 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CNTN3Q9P232 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CNTN3Q9P232 AP002414.1-201ENST00000391405 1147 ntBASIC18.71■□□□□ 0.59
CNTN3Q9P232 PTCHD3P3-201ENST00000403073 906 ntBASIC18.71■□□□□ 0.59
CNTN3Q9P232 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.71■□□□□ 0.59
CNTN3Q9P232 AL591424.1-201ENST00000442569 1213 ntBASIC18.71■□□□□ 0.59
CNTN3Q9P232 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.71■□□□□ 0.59
CNTN3Q9P232 POLD2P1-201ENST00000511220 997 ntBASIC18.71■□□□□ 0.59
CNTN3Q9P232 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CNTN3Q9P232 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CNTN3Q9P232 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.71■□□□□ 0.59
CNTN3Q9P232 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CNTN3Q9P232 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CNTN3Q9P232 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CNTN3Q9P232 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CNTN3Q9P232 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CNTN3Q9P232 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CNTN3Q9P232 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
CNTN3Q9P232 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 AC134043.2-201ENST00000624206 2238 ntBASIC18.7■□□□□ 0.58
CNTN3Q9P232 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 MED15P5-201ENST00000423150 992 ntBASIC18.7■□□□□ 0.58
CNTN3Q9P232 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 AC108073.2-201ENST00000464002 357 ntBASIC18.7■□□□□ 0.58
CNTN3Q9P232 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNTN3Q9P232 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.7■□□□□ 0.58
CNTN3Q9P232 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 GNAS-203ENST00000306120 1878 ntBASIC18.69■□□□□ 0.58
CNTN3Q9P232 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CNTN3Q9P232 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.69■□□□□ 0.58
CNTN3Q9P232 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.68■□□□□ 0.58
CNTN3Q9P232 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNTN3Q9P232 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms