Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 AC098590.1-201ENST00000468126 897 ntBASIC17.3■□□□□ 0.36
SSU72Q9NP77 AC068472.1-201ENST00000474589 881 ntBASIC17.3■□□□□ 0.36
SSU72Q9NP77 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 LINC02199-201ENST00000506655 2702 ntBASIC17.3■□□□□ 0.36
SSU72Q9NP77 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SSU72Q9NP77 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSU72Q9NP77 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 ECEL1P3-201ENST00000427961 737 ntBASIC17.29■□□□□ 0.36
SSU72Q9NP77 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 IGHV3-52-201ENST00000519770 353 ntBASIC17.29■□□□□ 0.36
SSU72Q9NP77 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 AL136038.4-201ENST00000603606 1261 ntBASIC17.29■□□□□ 0.36
SSU72Q9NP77 AC019129.2-201ENST00000609837 1235 ntBASIC17.29■□□□□ 0.36
SSU72Q9NP77 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.29■□□□□ 0.36
SSU72Q9NP77 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
SSU72Q9NP77 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SSU72Q9NP77 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 AC079602.3-201ENST00000623931 403 ntBASIC17.28■□□□□ 0.36
SSU72Q9NP77 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.28■□□□□ 0.36
SSU72Q9NP77 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SSU72Q9NP77 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms