Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 KLF4P1-201ENST00000412782 1185 ntBASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 PRYP5-201ENST00000451909 266 ntBASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 STK19B-204ENST00000512515 211 ntBASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 SART3-203ENST00000546611 1184 ntBASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 HLA-J-201ENST00000462773 1622 ntBASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 AC134043.2-201ENST00000624206 2238 ntBASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 AL355312.1-201ENST00000407115 2176 ntBASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 FDX1P1-201ENST00000449115 551 ntBASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 AF186996.4-201ENST00000467186 377 ntBASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 RNPS1P1-201ENST00000507437 918 ntBASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 AC073648.2-201ENST00000510116 352 ntBASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM39Q9HCM9 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 SIGLEC30P-201ENST00000455569 941 ntBASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 AC009078.2-202ENST00000463353 338 ntBASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 AL662844.1-201ENST00000546340 181 ntBASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 AC021087.4-201ENST00000563761 564 ntBASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 AL022326.1-202ENST00000641533 845 ntBASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms