Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP29Q9HBJ7 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP29Q9HBJ7 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.96■□□□□ 0.47
USP29Q9HBJ7 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
USP29Q9HBJ7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.96■□□□□ 0.47
USP29Q9HBJ7 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.96■□□□□ 0.47
USP29Q9HBJ7 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP29Q9HBJ7 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP29Q9HBJ7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.96■□□□□ 0.46
USP29Q9HBJ7 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
USP29Q9HBJ7 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
USP29Q9HBJ7 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 FOSL1P1-201ENST00000511041 816 ntBASIC17.95■□□□□ 0.46
USP29Q9HBJ7 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP29Q9HBJ7 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 AL160237.2-201ENST00000556165 472 ntBASIC17.94■□□□□ 0.46
USP29Q9HBJ7 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 AP005901.3-202ENST00000581653 237 ntBASIC17.94■□□□□ 0.46
USP29Q9HBJ7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 AL732292.2-201ENST00000609649 430 ntBASIC17.94■□□□□ 0.46
USP29Q9HBJ7 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP29Q9HBJ7 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 MYCLP1-201ENST00000372451 1075 ntBASIC17.93■□□□□ 0.46
USP29Q9HBJ7 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 EMBP1-201ENST00000458200 901 ntBASIC17.93■□□□□ 0.46
USP29Q9HBJ7 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
USP29Q9HBJ7 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms