Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC28.49■■■□□ 2.15
IFT140Q96RY7 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
IFT140Q96RY7 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
IFT140Q96RY7 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC28.49■■■□□ 2.15
IFT140Q96RY7 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
IFT140Q96RY7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
IFT140Q96RY7 AC016027.1-202ENST00000607927 1699 ntBASIC28.48■■■□□ 2.15
IFT140Q96RY7 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
IFT140Q96RY7 MXI1-205ENST00000393134 889 ntTSL 2 BASIC28.48■■■□□ 2.15
IFT140Q96RY7 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC28.48■■■□□ 2.15
IFT140Q96RY7 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC28.48■■■□□ 2.15
IFT140Q96RY7 AC132938.2-201ENST00000579188 680 ntBASIC28.48■■■□□ 2.15
IFT140Q96RY7 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC28.48■■■□□ 2.15
IFT140Q96RY7 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC28.48■■■□□ 2.15
IFT140Q96RY7 AL591163.1-201ENST00000641757 987 ntBASIC28.48■■■□□ 2.15
IFT140Q96RY7 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
IFT140Q96RY7 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.48■■■□□ 2.15
IFT140Q96RY7 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
IFT140Q96RY7 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC28.48■■■□□ 2.15
IFT140Q96RY7 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
IFT140Q96RY7 SLC25A6P5-201ENST00000435663 894 ntBASIC28.47■■■□□ 2.15
IFT140Q96RY7 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC28.47■■■□□ 2.15
IFT140Q96RY7 AC119751.2-201ENST00000504529 210 ntBASIC28.47■■■□□ 2.15
IFT140Q96RY7 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
IFT140Q96RY7 AC004790.1-201ENST00000612686 536 ntBASIC28.47■■■□□ 2.15
IFT140Q96RY7 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
IFT140Q96RY7 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC28.47■■■□□ 2.15
IFT140Q96RY7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC28.47■■■□□ 2.15
IFT140Q96RY7 AC007541.1-201ENST00000570282 1469 ntBASIC28.47■■■□□ 2.15
IFT140Q96RY7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC28.47■■■□□ 2.15
IFT140Q96RY7 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
IFT140Q96RY7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC28.47■■■□□ 2.15
IFT140Q96RY7 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
IFT140Q96RY7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC28.47■■■□□ 2.15
IFT140Q96RY7 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
IFT140Q96RY7 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
IFT140Q96RY7 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
IFT140Q96RY7 HCG4-201ENST00000418983 998 ntBASIC28.46■■■□□ 2.15
IFT140Q96RY7 MIR4525-201ENST00000580000 75 ntBASIC28.46■■■□□ 2.15
IFT140Q96RY7 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC28.46■■■□□ 2.15
IFT140Q96RY7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
IFT140Q96RY7 AL020996.1-203ENST00000536896 2307 ntBASIC28.46■■■□□ 2.15
IFT140Q96RY7 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
IFT140Q96RY7 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
IFT140Q96RY7 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
IFT140Q96RY7 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC28.46■■■□□ 2.15
IFT140Q96RY7 DFFBP1-201ENST00000433250 979 ntBASIC28.46■■■□□ 2.15
IFT140Q96RY7 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC28.46■■■□□ 2.15
IFT140Q96RY7 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC28.46■■■□□ 2.15
IFT140Q96RY7 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC28.46■■■□□ 2.15
IFT140Q96RY7 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
IFT140Q96RY7 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
IFT140Q96RY7 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC28.46■■■□□ 2.15
IFT140Q96RY7 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
IFT140Q96RY7 AC087499.5-201ENST00000452760 1342 ntBASIC28.46■■■□□ 2.15
IFT140Q96RY7 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC28.45■■■□□ 2.15
IFT140Q96RY7 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
IFT140Q96RY7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC28.45■■■□□ 2.14
IFT140Q96RY7 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
IFT140Q96RY7 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
IFT140Q96RY7 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
IFT140Q96RY7 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC28.45■■■□□ 2.14
IFT140Q96RY7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC28.45■■■□□ 2.14
IFT140Q96RY7 AL353732.1-201ENST00000569618 1459 ntBASIC28.45■■■□□ 2.14
IFT140Q96RY7 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC28.45■■■□□ 2.14
IFT140Q96RY7 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC28.44■■■□□ 2.14
IFT140Q96RY7 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
IFT140Q96RY7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
IFT140Q96RY7 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
IFT140Q96RY7 AC022210.1-201ENST00000449856 793 ntBASIC28.44■■■□□ 2.14
IFT140Q96RY7 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
IFT140Q96RY7 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC28.44■■■□□ 2.14
IFT140Q96RY7 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC28.44■■■□□ 2.14
IFT140Q96RY7 AC104794.3-201ENST00000566840 1248 ntBASIC28.44■■■□□ 2.14
IFT140Q96RY7 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC28.44■■■□□ 2.14
IFT140Q96RY7 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC28.44■■■□□ 2.14
IFT140Q96RY7 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC28.44■■■□□ 2.14
IFT140Q96RY7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
IFT140Q96RY7 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
IFT140Q96RY7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
IFT140Q96RY7 NARF-206ENST00000457415 1668 ntTSL 5 BASIC28.43■■■□□ 2.14
IFT140Q96RY7 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC28.43■■■□□ 2.14
IFT140Q96RY7 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
IFT140Q96RY7 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC28.43■■■□□ 2.14
IFT140Q96RY7 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC28.43■■■□□ 2.14
IFT140Q96RY7 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC28.43■■■□□ 2.14
IFT140Q96RY7 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC28.43■■■□□ 2.14
IFT140Q96RY7 AC105233.2-201ENST00000523697 349 ntBASIC28.43■■■□□ 2.14
IFT140Q96RY7 AF228730.5-201ENST00000530288 346 ntBASIC28.43■■■□□ 2.14
IFT140Q96RY7 ZNF890P-202ENST00000530367 1156 ntBASIC28.43■■■□□ 2.14
IFT140Q96RY7 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC28.43■■■□□ 2.14
IFT140Q96RY7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
IFT140Q96RY7 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC28.43■■■□□ 2.14
IFT140Q96RY7 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
IFT140Q96RY7 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
IFT140Q96RY7 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC28.42■■■□□ 2.14
IFT140Q96RY7 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
IFT140Q96RY7 KRT17P8-201ENST00000540749 863 ntBASIC28.42■■■□□ 2.14
IFT140Q96RY7 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC28.42■■■□□ 2.14
IFT140Q96RY7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC28.42■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms