Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 UXT-AS1-201ENST00000590504 1525 ntBASIC17.06■□□□□ 0.32
VPS13AQ96RL7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 SNX29P1-201ENST00000548357 1007 ntBASIC17.05■□□□□ 0.32
VPS13AQ96RL7 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VPS13AQ96RL7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13AQ96RL7 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 AC009336.1-201ENST00000608941 1553 ntBASIC17.03■□□□□ 0.32
VPS13AQ96RL7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 AC135776.1-201ENST00000319817 2481 ntBASIC17.03■□□□□ 0.32
VPS13AQ96RL7 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 COX11-210ENST00000639671 696 ntBASIC17.03■□□□□ 0.32
VPS13AQ96RL7 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS13AQ96RL7 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS13AQ96RL7 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms