Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 THAP7-208ENST00000498406 1957 ntTSL 223.79■■□□□ 1.41e-7■□□□□ 10.8
UPF1Q92900 THAP7-204ENST00000471073 1809 ntTSL 223.54■■□□□ 1.361e-7■□□□□ 10.8
UPF1Q92900 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.351e-7■□□□□ 10.8
UPF1Q92900 AC093323.1-203ENST00000444232 1605 ntTSL 1 (best)29.34■■■□□ 2.292e-9■□□□□ 10.8
UPF1Q92900 AC093323.1-202ENST00000635031 2045 ntBASIC25.34■■□□□ 1.652e-9■□□□□ 10.8
UPF1Q92900 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.58■■□□□ 1.362e-9■□□□□ 10.8
UPF1Q92900 AGPAT3-211ENST00000467358 3955 ntTSL 211.93□□□□□ -0.53e-6■□□□□ 10.8
UPF1Q92900 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC25.89■■□□□ 1.743e-21■□□□□ 10.8
UPF1Q92900 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.583e-10■□□□□ 10.8
UPF1Q92900 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.443e-10■□□□□ 10.8
UPF1Q92900 SEPT11-208ENST00000506731 659 ntTSL 511.96□□□□□ -0.493e-10■□□□□ 10.8
UPF1Q92900 SEPT11-216ENST00000515671 507 ntTSL 29.78□□□□□ -0.843e-10■□□□□ 10.8
UPF1Q92900 SEPT11-202ENST00000502401 276 ntTSL 59.53□□□□□ -0.883e-10■□□□□ 10.8
UPF1Q92900 SEPT11-215ENST00000513697 328 ntTSL 29.18□□□□□ -0.943e-10■□□□□ 10.8
UPF1Q92900 SEPT11-214ENST00000513373 546 ntTSL 27.9□□□□□ -1.143e-10■□□□□ 10.8
UPF1Q92900 ZNF146-202ENST00000456324 3780 ntAPPRIS P1 TSL 2 BASIC9.09□□□□□ -0.966e-10■□□□□ 10.8
UPF1Q92900 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.266e-10■□□□□ 10.8
UPF1Q92900 RBBP5-202ENST00000367164 4290 ntTSL 1 (best) BASIC10.16□□□□□ -0.782e-7■□□□□ 10.8
UPF1Q92900 RBBP5-201ENST00000264515 4404 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.892e-7■□□□□ 10.8
UPF1Q92900 ABCE1-201ENST00000296577 3921 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.921e-8■□□□□ 10.8
UPF1Q92900 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC19.42■□□□□ 0.74e-11■□□□□ 10.8
UPF1Q92900 HSDL1-205ENST00000565275 533 ntTSL 28.27□□□□□ -1.091e-7■□□□□ 10.7
UPF1Q92900 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.022e-7■□□□□ 10.7
UPF1Q92900 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13□□□□□ -0.332e-7■□□□□ 10.7
UPF1Q92900 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.56□□□□□ -22e-7■□□□□ 10.7
UPF1Q92900 CD81-204ENST00000468153 940 ntTSL 225.09■■□□□ 1.611e-14■□□□□ 10.7
UPF1Q92900 COL18A1-207ENST00000473212 2515 ntTSL 221.11■□□□□ 0.976e-10■□□□□ 10.7
UPF1Q92900 DBI-210ENST00000542275 757 ntTSL 5 BASIC30.28■■■□□ 2.442e-7■□□□□ 10.7
UPF1Q92900 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC23.5■■□□□ 1.352e-7■□□□□ 10.7
UPF1Q92900 DBI-205ENST00000460901 774 ntTSL 1 (best)23.1■■□□□ 1.292e-7■□□□□ 10.7
UPF1Q92900 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC23.04■■□□□ 1.282e-7■□□□□ 10.7
UPF1Q92900 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC21.65■■□□□ 1.062e-7■□□□□ 10.7
UPF1Q92900 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.842e-7■□□□□ 10.7
UPF1Q92900 DBI-202ENST00000355857 637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.342e-7■□□□□ 10.7
UPF1Q92900 DBI-206ENST00000475783 842 ntTSL 1 (best)16.45■□□□□ 0.222e-7■□□□□ 10.7
UPF1Q92900 DBI-209ENST00000535757 740 ntTSL 1 (best) BASIC16.2■□□□□ 0.182e-7■□□□□ 10.7
UPF1Q92900 DBI-204ENST00000409094 576 ntTSL 1 (best) BASIC15.25■□□□□ 0.032e-7■□□□□ 10.7
UPF1Q92900 DBI-208ENST00000535617 654 ntTSL 1 (best) BASIC14.52□□□□□ -0.092e-7■□□□□ 10.7
UPF1Q92900 NECAB3-211ENST00000485399 1373 ntTSL 230.03■■■□□ 2.41e-12■□□□□ 10.7
UPF1Q92900 RAC2-207ENST00000481215 480 ntTSL 1 (best)16.6■□□□□ 0.251e-12■□□□□ 10.7
UPF1Q92900 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.611e-12■□□□□ 10.7
UPF1Q92900 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.183e-8■□□□□ 10.7
UPF1Q92900 CCNI-209ENST00000515790 390 ntTSL 215.38■□□□□ 0.054e-12■□□□□ 10.7
UPF1Q92900 RIT1-202ENST00000368323 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.491e-6■□□□□ 10.7
UPF1Q92900 YARS-208ENST00000487404 2197 ntTSL 211.76□□□□□ -0.533e-8■□□□□ 10.7
UPF1Q92900 PTP4A2-201ENST00000457805 1032 ntTSL 2 BASIC13.96□□□□□ -0.176e-11■□□□□ 10.7
UPF1Q92900 PTP4A2-213ENST00000532001 911 ntTSL 512.64□□□□□ -0.396e-11■□□□□ 10.7
UPF1Q92900 RNF10-214ENST00000540046 635 ntTSL 318.62■□□□□ 0.573e-8■□□□□ 10.7
UPF1Q92900 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC22.47■■□□□ 1.194e-14■□□□□ 10.7
UPF1Q92900 snoU2-30.1-201ENST00000365012 70 ntBASIC4.29□□□□□ -1.724e-14■□□□□ 10.7
UPF1Q92900 DIS3L2-206ENST00000417808 923 ntTSL 224.63■■□□□ 1.534e-9■□□□□ 10.7
UPF1Q92900 DIS3L2-207ENST00000418143 843 ntTSL 321.28■■□□□ 14e-9■□□□□ 10.7
UPF1Q92900 PMM2-211ENST00000566540 1557 ntTSL 1 (best)19.05■□□□□ 0.644e-9■□□□□ 10.7
UPF1Q92900 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.284e-9■□□□□ 10.7
UPF1Q92900 DIS3L2-211ENST00000434477 659 ntTSL 314.71□□□□□ -0.054e-9■□□□□ 10.7
UPF1Q92900 AC022167.2-201ENST00000565934 2288 ntTSL 3 BASIC13.57□□□□□ -0.244e-9■□□□□ 10.7
UPF1Q92900 DIS3L2-210ENST00000433430 4671 ntTSL 512.94□□□□□ -0.344e-9■□□□□ 10.7
UPF1Q92900 DIS3L2-209ENST00000429283 4332 ntTSL 212.55□□□□□ -0.44e-9■□□□□ 10.7
UPF1Q92900 PMM2-214ENST00000567697 5409 ntTSL 1 (best)11.56□□□□□ -0.564e-9■□□□□ 10.7
UPF1Q92900 DIS3L2-201ENST00000273009 3201 ntTSL 2 BASIC10.67□□□□□ -0.74e-9■□□□□ 10.7
UPF1Q92900 DIS3L2-203ENST00000390005 3328 ntTSL 1 (best)9.99□□□□□ -0.814e-9■□□□□ 10.7
UPF1Q92900 DIS3L2-202ENST00000325385 3501 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -14e-9■□□□□ 10.7
UPF1Q92900 RHOBTB3-214ENST00000513091 591 ntTSL 319.43■□□□□ 0.75e-12■□□□□ 10.7
UPF1Q92900 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.75e-12■□□□□ 10.7
UPF1Q92900 UROD-214ENST00000478467 857 ntTSL 318.71■□□□□ 0.599e-7■□□□□ 10.7
UPF1Q92900 UROD-202ENST00000428106 682 ntTSL 312.12□□□□□ -0.479e-7■□□□□ 10.7
UPF1Q92900 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.621e-6■□□□□ 10.7
UPF1Q92900 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.11e-6■□□□□ 10.7
UPF1Q92900 LITAF-203ENST00000413364 2292 ntTSL 2 BASIC14.19□□□□□ -0.141e-6■□□□□ 10.7
UPF1Q92900 LITAF-221ENST00000622633 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.491e-6■□□□□ 10.7
UPF1Q92900 OGFOD1-201ENST00000336111 2415 ntTSL 210.46□□□□□ -0.732e-6■□□□□ 10.6
UPF1Q92900 SERPINA3-208ENST00000556968 1289 ntTSL 1 (best)16.02■□□□□ 0.167e-15■□□□□ 10.6
UPF1Q92900 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.047e-15■□□□□ 10.6
UPF1Q92900 SERPINA3-202ENST00000393080 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.47e-15■□□□□ 10.6
UPF1Q92900 SERPINA3-201ENST00000393078 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.447e-15■□□□□ 10.6
UPF1Q92900 SERPINA3-204ENST00000482740 2420 ntTSL 1 (best) BASIC12.11□□□□□ -0.477e-15■□□□□ 10.6
UPF1Q92900 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.74e-10■□□□□ 10.6
UPF1Q92900 FBXO2-206ENST00000642025 2215 nt23.2■■□□□ 1.34e-10■□□□□ 10.6
UPF1Q92900 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC21.84■■□□□ 1.098e-15■□□□□ 10.6
UPF1Q92900 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC23.82■■□□□ 1.42e-13■□□□□ 10.6
UPF1Q92900 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC20.07■□□□□ 0.82e-13■□□□□ 10.6
UPF1Q92900 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.145e-7■□□□□ 10.6
UPF1Q92900 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.025e-7■□□□□ 10.6
UPF1Q92900 CYTH2-213ENST00000620214 2020 ntTSL 5 BASIC14.88□□□□□ -0.035e-7■□□□□ 10.6
UPF1Q92900 AC074091.1-201ENST00000505973 1741 ntTSL 2 BASIC15.5■□□□□ 0.074e-9■□□□□ 10.6
UPF1Q92900 ZNF512-204ENST00000416005 3515 ntTSL 2 BASIC11.68□□□□□ -0.544e-9■□□□□ 10.6
UPF1Q92900 ZNF512-202ENST00000379717 3417 ntAPPRIS ALT1 TSL 5 BASIC10.97□□□□□ -0.654e-9■□□□□ 10.6
UPF1Q92900 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC10□□□□□ -0.814e-9■□□□□ 10.6
UPF1Q92900 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC8.99□□□□□ -0.974e-9■□□□□ 10.6
UPF1Q92900 ZNF512-201ENST00000355467 3541 ntAPPRIS P2 TSL 2 BASIC8.23□□□□□ -1.094e-9■□□□□ 10.6
UPF1Q92900 ZNF512-206ENST00000488055 2465 ntTSL 27.56□□□□□ -1.24e-9■□□□□ 10.6
UPF1Q92900 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23.41■■□□□ 1.346e-8■□□□□ 10.6
UPF1Q92900 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.596e-8■□□□□ 10.6
UPF1Q92900 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.416e-8■□□□□ 10.6
UPF1Q92900 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.296e-8■□□□□ 10.6
UPF1Q92900 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC9.42□□□□□ -0.96e-8■□□□□ 10.6
UPF1Q92900 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC7.26□□□□□ -1.256e-8■□□□□ 10.6
UPF1Q92900 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.66□□□□□ -1.346e-8■□□□□ 10.6
UPF1Q92900 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC6.43□□□□□ -1.386e-8■□□□□ 10.6
UPF1Q92900 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.652e-22■□□□□ 10.6
Retrieved 100 of 15,879 protein–RNA pairs in 73.9 ms