Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHKBP1Q8TBC3 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHKBP1Q8TBC3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHKBP1Q8TBC3 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 REXO1L9P-201ENST00000604264 2108 ntBASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 AC108073.2-201ENST00000464002 357 ntBASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 AC009053.2-201ENST00000563701 2365 ntBASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 PCDHA12-202ENST00000613593 2588 ntBASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHKBP1Q8TBC3 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 RPS15P9-201ENST00000494093 319 ntBASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
SHKBP1Q8TBC3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.27■□□□□ 0.51
SHKBP1Q8TBC3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
SHKBP1Q8TBC3 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.27■□□□□ 0.51
SHKBP1Q8TBC3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHKBP1Q8TBC3 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
SHKBP1Q8TBC3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHKBP1Q8TBC3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SHKBP1Q8TBC3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 STK19B-204ENST00000512515 211 ntBASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 IGHV3-65-201ENST00000523210 341 ntBASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
SHKBP1Q8TBC3 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms