Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 AC106820.2-201ENST00000563775 3264 ntBASIC20.83■□□□□ 0.93
RNF20Q5VTR2 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF20Q5VTR2 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF20Q5VTR2 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RNF20Q5VTR2 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.83■□□□□ 0.92
RNF20Q5VTR2 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF20Q5VTR2 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF20Q5VTR2 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 AC003669.1-201ENST00000334569 611 ntBASIC20.82■□□□□ 0.92
RNF20Q5VTR2 AC092119.3-201ENST00000612618 583 ntBASIC20.82■□□□□ 0.92
RNF20Q5VTR2 AC114341.1-201ENST00000618070 349 ntBASIC20.82■□□□□ 0.92
RNF20Q5VTR2 AD001527.2-201ENST00000622994 785 ntBASIC20.82■□□□□ 0.92
RNF20Q5VTR2 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF20Q5VTR2 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 RCN1P2-201ENST00000398357 915 ntBASIC20.81■□□□□ 0.92
RNF20Q5VTR2 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 OR6D1P-203ENST00000641209 4860 ntBASIC20.81■□□□□ 0.92
RNF20Q5VTR2 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
RNF20Q5VTR2 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.8■□□□□ 0.92
RNF20Q5VTR2 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms