Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 GMCL1P1-201ENST00000463439 1581 ntBASIC12.43□□□□□ -0.42
PRKDCP78527 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
PRKDCP78527 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
PRKDCP78527 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC12.43□□□□□ -0.42
PRKDCP78527 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
PRKDCP78527 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 BTBD7P1-201ENST00000447253 1453 ntBASIC12.43□□□□□ -0.42
PRKDCP78527 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
PRKDCP78527 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12.43□□□□□ -0.42
PRKDCP78527 AL009183.1-201ENST00000603760 355 ntBASIC12.43□□□□□ -0.42
PRKDCP78527 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
PRKDCP78527 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
PRKDCP78527 SLC7A15P-201ENST00000424028 1363 ntBASIC12.42□□□□□ -0.42
PRKDCP78527 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC12.42□□□□□ -0.42
PRKDCP78527 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
PRKDCP78527 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC12.42□□□□□ -0.42
PRKDCP78527 AL161645.1-201ENST00000622716 1255 ntBASIC12.42□□□□□ -0.42
PRKDCP78527 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
PRKDCP78527 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
PRKDCP78527 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC12.42□□□□□ -0.42
PRKDCP78527 AC009949.1-201ENST00000623048 1830 ntBASIC12.42□□□□□ -0.42
PRKDCP78527 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC12.42□□□□□ -0.42
PRKDCP78527 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC12.42□□□□□ -0.42
PRKDCP78527 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
PRKDCP78527 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.42□□□□□ -0.42
PRKDCP78527 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC12.42□□□□□ -0.42
PRKDCP78527 AL645728.2-201ENST00000641974 660 ntBASIC12.42□□□□□ -0.42
PRKDCP78527 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.42□□□□□ -0.42
PRKDCP78527 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC12.42□□□□□ -0.42
PRKDCP78527 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
PRKDCP78527 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 AC087163.2-201ENST00000457299 853 ntBASIC12.42□□□□□ -0.42
PRKDCP78527 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC12.42□□□□□ -0.42
PRKDCP78527 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC12.42□□□□□ -0.42
PRKDCP78527 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC12.42□□□□□ -0.42
PRKDCP78527 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
PRKDCP78527 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
PRKDCP78527 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC12.41□□□□□ -0.42
PRKDCP78527 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC12.41□□□□□ -0.42
PRKDCP78527 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC12.41□□□□□ -0.42
PRKDCP78527 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.41□□□□□ -0.42
PRKDCP78527 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC12.41□□□□□ -0.42
PRKDCP78527 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC12.41□□□□□ -0.42
PRKDCP78527 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 AFG3L1P-217ENST00000557444 2447 ntBASIC12.41□□□□□ -0.42
PRKDCP78527 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
PRKDCP78527 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC12.41□□□□□ -0.42
PRKDCP78527 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC12.41□□□□□ -0.42
PRKDCP78527 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
PRKDCP78527 PC-208ENST00000529047 1607 ntTSL 3 BASIC12.41□□□□□ -0.42
PRKDCP78527 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
PRKDCP78527 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC12.41□□□□□ -0.42
PRKDCP78527 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 AC093010.1-201ENST00000473625 1624 ntBASIC12.41□□□□□ -0.42
PRKDCP78527 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 ACTG1P4-201ENST00000425123 1122 ntBASIC12.41□□□□□ -0.42
PRKDCP78527 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
PRKDCP78527 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.41□□□□□ -0.42
PRKDCP78527 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC12.41□□□□□ -0.42
PRKDCP78527 AL138918.1-201ENST00000568306 659 ntBASIC12.41□□□□□ -0.42
PRKDCP78527 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
PRKDCP78527 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC12.41□□□□□ -0.42
PRKDCP78527 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 AC016027.1-202ENST00000607927 1699 ntBASIC12.4□□□□□ -0.42
PRKDCP78527 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 BANF1P1-201ENST00000553684 263 ntBASIC12.4□□□□□ -0.42
PRKDCP78527 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.4□□□□□ -0.42
PRKDCP78527 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms