Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CKS1BP61024 AC132872.4-202ENST00000622924 2756 ntBASIC12.29□□□□□ -0.44
CKS1BP61024 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 DKFZP434A062-201ENST00000573103 5021 ntBASIC12.29□□□□□ -0.44
CKS1BP61024 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
CKS1BP61024 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
CKS1BP61024 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC12.28□□□□□ -0.44
CKS1BP61024 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 KSR1P1-201ENST00000446298 240 ntBASIC12.28□□□□□ -0.44
CKS1BP61024 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC12.28□□□□□ -0.44
CKS1BP61024 AC026366.1-201ENST00000488803 879 ntBASIC12.28□□□□□ -0.44
CKS1BP61024 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC12.28□□□□□ -0.44
CKS1BP61024 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC12.28□□□□□ -0.44
CKS1BP61024 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC12.28□□□□□ -0.44
CKS1BP61024 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC12.28□□□□□ -0.44
CKS1BP61024 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 DBET-201ENST00000630918 3363 ntBASIC12.28□□□□□ -0.44
CKS1BP61024 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CKS1BP61024 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
CKS1BP61024 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CKS1BP61024 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CKS1BP61024 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC12.27□□□□□ -0.44
CKS1BP61024 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
CKS1BP61024 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
CKS1BP61024 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC12.27□□□□□ -0.44
CKS1BP61024 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC12.27□□□□□ -0.44
CKS1BP61024 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CKS1BP61024 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC12.27□□□□□ -0.44
CKS1BP61024 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
CKS1BP61024 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC12.27□□□□□ -0.44
CKS1BP61024 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CKS1BP61024 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS1BP61024 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS1BP61024 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS1BP61024 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS1BP61024 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
CKS1BP61024 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS1BP61024 AL109659.2-201ENST00000606809 1674 ntBASIC12.27□□□□□ -0.45
CKS1BP61024 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC12.27□□□□□ -0.45
CKS1BP61024 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS1BP61024 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
CKS1BP61024 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS1BP61024 AL353807.1-201ENST00000427475 662 ntBASIC12.27□□□□□ -0.45
CKS1BP61024 AC004980.1-204ENST00000429707 299 ntBASIC12.27□□□□□ -0.45
CKS1BP61024 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS1BP61024 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC12.27□□□□□ -0.45
CKS1BP61024 AC091390.4-202ENST00000476426 537 ntBASIC12.27□□□□□ -0.45
CKS1BP61024 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC12.27□□□□□ -0.45
CKS1BP61024 LY6E-205ENST00000519611 635 ntTSL 3 BASIC12.27□□□□□ -0.45
CKS1BP61024 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
CKS1BP61024 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC12.27□□□□□ -0.45
CKS1BP61024 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC12.27□□□□□ -0.45
CKS1BP61024 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC12.27□□□□□ -0.45
CKS1BP61024 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC12.27□□□□□ -0.45
CKS1BP61024 AC142086.2-201ENST00000569753 217 ntBASIC12.27□□□□□ -0.45
CKS1BP61024 AC008403.3-201ENST00000598924 454 ntBASIC12.27□□□□□ -0.45
CKS1BP61024 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC12.27□□□□□ -0.45
CKS1BP61024 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms