Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.69■□□□□ 0.26
CLDN6P56747 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 AC093520.2-201ENST00000561830 333 ntBASIC16.69■□□□□ 0.26
CLDN6P56747 STK25P1-201ENST00000585406 838 ntBASIC16.69■□□□□ 0.26
CLDN6P56747 AL390955.2-201ENST00000603032 514 ntBASIC16.69■□□□□ 0.26
CLDN6P56747 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 NEFHP1-201ENST00000412845 2629 ntBASIC16.69■□□□□ 0.26
CLDN6P56747 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CLDN6P56747 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.69■□□□□ 0.26
CLDN6P56747 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.69■□□□□ 0.26
CLDN6P56747 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.68■□□□□ 0.26
CLDN6P56747 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.68■□□□□ 0.26
CLDN6P56747 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.68■□□□□ 0.26
CLDN6P56747 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 AP002414.1-201ENST00000391405 1147 ntBASIC16.68■□□□□ 0.26
CLDN6P56747 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.68■□□□□ 0.26
CLDN6P56747 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.68■□□□□ 0.26
CLDN6P56747 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.68■□□□□ 0.26
CLDN6P56747 DUTP2-201ENST00000519164 463 ntBASIC16.68■□□□□ 0.26
CLDN6P56747 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.68■□□□□ 0.26
CLDN6P56747 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
CLDN6P56747 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.68■□□□□ 0.26
CLDN6P56747 LINC00628-201ENST00000628516 1289 ntBASIC16.68■□□□□ 0.26
CLDN6P56747 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
CLDN6P56747 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLDN6P56747 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CLDN6P56747 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLDN6P56747 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.67■□□□□ 0.26
CLDN6P56747 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 AL031598.1-201ENST00000561511 1773 ntBASIC16.67■□□□□ 0.26
CLDN6P56747 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
CLDN6P56747 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CLDN6P56747 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
CLDN6P56747 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.67■□□□□ 0.26
CLDN6P56747 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CLDN6P56747 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.67■□□□□ 0.26
CLDN6P56747 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.67■□□□□ 0.26
CLDN6P56747 ACTG1P14-201ENST00000446382 1122 ntBASIC16.67■□□□□ 0.26
CLDN6P56747 HLA-J-203ENST00000494367 1087 ntBASIC16.67■□□□□ 0.26
CLDN6P56747 AC069262.1-201ENST00000539058 672 ntBASIC16.67■□□□□ 0.26
CLDN6P56747 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 DUX4L27-201ENST00000554796 1261 ntBASIC16.67■□□□□ 0.26
CLDN6P56747 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.67■□□□□ 0.26
CLDN6P56747 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.67■□□□□ 0.26
CLDN6P56747 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.67■□□□□ 0.26
CLDN6P56747 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.67■□□□□ 0.26
CLDN6P56747 AC068137.2-201ENST00000605408 478 ntBASIC16.67■□□□□ 0.26
CLDN6P56747 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 AC007064.4-201ENST00000637740 555 ntBASIC16.67■□□□□ 0.26
CLDN6P56747 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.67■□□□□ 0.26
CLDN6P56747 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.67■□□□□ 0.26
CLDN6P56747 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.67■□□□□ 0.26
CLDN6P56747 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.67■□□□□ 0.26
CLDN6P56747 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
CLDN6P56747 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CLDN6P56747 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN6P56747 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CLDN6P56747 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
CLDN6P56747 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms