Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.14■□□□□ 0.33
PKNOX1P55347 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.14■□□□□ 0.33
PKNOX1P55347 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.14■□□□□ 0.33
PKNOX1P55347 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PKNOX1P55347 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
PKNOX1P55347 HBZP1-201ENST00000354915 429 ntBASIC17.14■□□□□ 0.33
PKNOX1P55347 AC096633.1-201ENST00000422446 749 ntBASIC17.14■□□□□ 0.33
PKNOX1P55347 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
PKNOX1P55347 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.14■□□□□ 0.33
PKNOX1P55347 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.14■□□□□ 0.33
PKNOX1P55347 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.14■□□□□ 0.33
PKNOX1P55347 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.14■□□□□ 0.33
PKNOX1P55347 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PKNOX1P55347 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 LYSMD4-203ENST00000378904 2122 ntBASIC17.14■□□□□ 0.33
PKNOX1P55347 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.13■□□□□ 0.33
PKNOX1P55347 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.13■□□□□ 0.33
PKNOX1P55347 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.13■□□□□ 0.33
PKNOX1P55347 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
PKNOX1P55347 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
PKNOX1P55347 RNF152P1-201ENST00000397754 604 ntBASIC17.13■□□□□ 0.33
PKNOX1P55347 TSPY5P-201ENST00000426936 936 ntBASIC17.13■□□□□ 0.33
PKNOX1P55347 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.13■□□□□ 0.33
PKNOX1P55347 AL359075.1-203ENST00000462729 1002 ntBASIC17.13■□□□□ 0.33
PKNOX1P55347 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
PKNOX1P55347 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.13■□□□□ 0.33
PKNOX1P55347 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.13■□□□□ 0.33
PKNOX1P55347 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.13■□□□□ 0.33
PKNOX1P55347 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.13■□□□□ 0.33
PKNOX1P55347 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
PKNOX1P55347 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.13■□□□□ 0.33
PKNOX1P55347 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 LINC01311-201ENST00000565162 1445 ntBASIC17.13■□□□□ 0.33
PKNOX1P55347 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.13■□□□□ 0.33
PKNOX1P55347 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PKNOX1P55347 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
PKNOX1P55347 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
PKNOX1P55347 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PKNOX1P55347 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.12■□□□□ 0.33
PKNOX1P55347 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.12■□□□□ 0.33
PKNOX1P55347 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.12■□□□□ 0.33
PKNOX1P55347 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.12■□□□□ 0.33
PKNOX1P55347 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.12■□□□□ 0.33
PKNOX1P55347 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
PKNOX1P55347 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms