Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
LIMK1P53667 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.19■□□□□ 0.34
LIMK1P53667 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
LIMK1P53667 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
LIMK1P53667 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.19■□□□□ 0.34
LIMK1P53667 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
LIMK1P53667 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.19■□□□□ 0.34
LIMK1P53667 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.19■□□□□ 0.34
LIMK1P53667 AC093520.2-201ENST00000561830 333 ntBASIC17.19■□□□□ 0.34
LIMK1P53667 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.19■□□□□ 0.34
LIMK1P53667 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.19■□□□□ 0.34
LIMK1P53667 GGTLC5P-201ENST00000617623 998 ntBASIC17.19■□□□□ 0.34
LIMK1P53667 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
LIMK1P53667 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.19■□□□□ 0.34
LIMK1P53667 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.19■□□□□ 0.34
LIMK1P53667 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
LIMK1P53667 AC008764.6-201ENST00000595909 2069 ntBASIC17.19■□□□□ 0.34
LIMK1P53667 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
LIMK1P53667 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
LIMK1P53667 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.19■□□□□ 0.34
LIMK1P53667 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
LIMK1P53667 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMK1P53667 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMK1P53667 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMK1P53667 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMK1P53667 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.18■□□□□ 0.34
LIMK1P53667 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.18■□□□□ 0.34
LIMK1P53667 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.18■□□□□ 0.34
LIMK1P53667 AC093214.1-201ENST00000511688 1107 ntBASIC17.18■□□□□ 0.34
LIMK1P53667 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.18■□□□□ 0.34
LIMK1P53667 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.18■□□□□ 0.34
LIMK1P53667 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.18■□□□□ 0.34
LIMK1P53667 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIMK1P53667 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.18■□□□□ 0.34
LIMK1P53667 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.18■□□□□ 0.34
LIMK1P53667 LINC01126-201ENST00000623515 1646 ntBASIC17.18■□□□□ 0.34
LIMK1P53667 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMK1P53667 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIMK1P53667 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMK1P53667 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMK1P53667 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.17■□□□□ 0.34
LIMK1P53667 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
LIMK1P53667 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMK1P53667 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMK1P53667 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.17■□□□□ 0.34
LIMK1P53667 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMK1P53667 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
LIMK1P53667 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMK1P53667 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMK1P53667 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIMK1P53667 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIMK1P53667 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
LIMK1P53667 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMK1P53667 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.16■□□□□ 0.34
LIMK1P53667 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.16■□□□□ 0.34
LIMK1P53667 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms